Basic Information | |
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Taxon OID | 3300031507 Open in IMG/M |
Scaffold ID | Ga0307509_10013003 Open in IMG/M |
Source Dataset Name | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9884 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (44.44%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → rosids incertae sedis → Vitales → Vitaceae → Viteae → Vitis → Vitis vinifera | (Source: IMG/M) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Washington | |||||||
Coordinates | Lat. (o) | 46.0356 | Long. (o) | -122.86 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000433 | Metagenome | 1147 | Y |
F002798 | Metagenome | 529 | Y |
F006456 | Metagenome | 372 | Y |
F060474 | Metagenome | 132 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0307509_100130031 | F002798 | N/A | MVSINHEDKIQFIKDGLSKGSLDNLLLTLETHPSGDMHHAIHDLSPQFHKEHARHSLGNLTKKDPVCQFLRKLDGKPIPDP |
Ga0307509_100130032 | F006456 | N/A | MDTTLEKLKKHFPALPSNAIAKIYRARCERLRLLMNHGIPEDIHWMIEAKVRLSGESSNSFISYMPRTGKNTFAKKCHAKQLKVCHRCARWTCNT |
Ga0307509_100130036 | F060474 | GGA | MYNLREDHDLQAKFASLARKVETLEFKKSGQLKSVQDIMCQICETNEHSTNDCPTLPSFK |
Ga0307509_100130039 | F000433 | N/A | MVFQFEFNQHLLSKLSPLFVLTISVVKLINQSFDLCDRPAFKMNIYHKLKVSYIIRLVIIKHALDKELLILQVQNDDIKP |
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