Scaffold Ga0307509_10002512

Overview

Basic Information

• Taxon OID: 3300031507
• Scaffold ID: Ga0307509_10002512
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29574
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (76.19%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales → Tuberaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.0356
  • Long. (^o): -122.86

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036154	Metagenome	170	Y
F045458	Metagenome	152	Y
F046104	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307509_1000251220	F045458	GGA	MGEIIRAKNETKRQVLWWTNTEVGVPLMQGKGNRIKESTEGRTGVRGQEKN
Ga0307509_1000251222	F036154	N/A	MDYPKAGMHAPVLGQMYWLGTKVHEDKSQNVELEQKEMVLGFLDYDDTVYNEILDPLGAGIYIRATVHSMEMMRSRSTSSRVVMGHVHGTIVDSDSDSEIEAYPENCGA
Ga0307509_1000251242	F046104	N/A	VVGGNIVGGNPVEVTPTKVASLFSSGREDQRGASGPTSVTPWRRRALLCCLERQERMACSKVSGSKPQRGQEVSASGDLQVGWAAR