Scaffold Ga0307509_10001231

Overview

Basic Information

• Taxon OID: 3300031507
• Scaffold ID: Ga0307509_10001231
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43370
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (61.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales → Tuberaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.0356
  • Long. (^o): -122.86

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038487	Metagenome	165	Y
F045458	Metagenome	152	Y
F061411	Metagenome	131	Y
F074206	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307509_100012311	F038487	GGAG	MAIDAEGVQISLCSIRKTKHPDSLPDARVELDSALMREGQEGDRRDAGELRV
Ga0307509_1000123112	F045458	GGGGG	MPAKDETKWEILSWINTEMGVQVRQGKGSHTKESKEGTTGVRGQETN
Ga0307509_1000123113	F074206	N/A	MLGGYALGVCFGRVFWACVLGVCFGRVFWACVLGVCFGRVFWVCVLGVCFGNMFWAYVLGVCFVCLFWGYALGVCFKCMALEGMALGASLWVNNFGRMALSIWILPKKPEAKY
Ga0307509_1000123115	F061411	AGG	LEICGLEWANGGGKAVEFVQGGRIAGLLELRTRESHAILQALELGYKIKSRITSLEIFHQCDSGRPVVGGKITWGLVLDSDS