Scaffold Ga0307509_10000911

Overview

Basic Information

• Taxon OID: 3300031507
• Scaffold ID: Ga0307509_10000911
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50545
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (72.41%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.0356
  • Long. (^o): -122.86

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008927	Metagenome	325	Y
F100119	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307509_1000091111	F008927	AGGTGG	VPSKWIGCIRKGQAGNRWSPREKAYRYDPEDKLCNAGSPEYDMRFHDEFSPEPTKEDWPSAHQGVTVPLVSTGAR
Ga0307509_1000091130	F008927	GAGG	MPSKWIGCIHEGQVGKRWSPREKTHRYGPEDKSCNAGLPDYDMRLHDECSMEPTKEDWPSSVQRVTLPLVSMGAR
Ga0307509_1000091145	F100119	AGG	MLSPVSSGRSSDIHSLVTVQLREDAREFTLVDIVTILGLAHLIPEGNRGGLSNSRIDLRTFNEID
Ga0307509_1000091157	F008927	AGGAGG	MASKWIGCIHKGLVGKRWRPREKNHRYDPENKLCNARRPEYDLQLHVEFSTEPTKEDWQSSVLRVRLPWVTTSTR