Scaffold Ga0307509_10000381

Overview

Basic Information

• Taxon OID: 3300031507
• Scaffold ID: Ga0307509_10000381
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 74827
• Total Scaffold Genes: 104
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (46.15%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.0356
  • Long. (^o): -122.86

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045459	Metagenome	152	Y
F046104	Metagenome	151	Y
F100119	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307509_10000381100	F046104	N/A	VEGGNIVGGNPVEVTPMKMASLLSSGRDDQSGALGPTSVTPWRRWDLLCCLEGHDRMACLKVSGSKPQRGQEVSASEDFQVGWAAR
Ga0307509_1000038143	F100119	AGG	MSLVDSGRPSDVHGLVTVQLRDVTRELTIVDIGTTIGLAHLILETERRWLVNSRIDLRMFNEIY
Ga0307509_1000038168	F045459	N/A	MANLSVSASIIPDGVETTSGVSSSVYLLTTMVTNYLALVLVEGSLTRWTEDGHSSLVGSVKNSVCNSISYSSLPALHDVSSGSYL
Ga0307509_1000038175	F045459	N/A	MANLSVDASVIPDGVETTSGVSSSVYLLTMIVTNCLAPMLTAGSLTRWIEDGQSSLVGSVKNSTCNRMPYSGLPALHDLSLRSYL
Ga0307509_1000038183	F045459	N/A	MANLSVRPCIIPDGVETTSSVSSSVYLLATMATNYLALVLVTGSLTRRTEDVISSLVGSVENSICNCISYSGVPALHDLSSGLYL
Ga0307509_1000038195	F045459	N/A	MANLSVWAFVIPDGVETTPSGVSSSVYPLATMATNYLALVLVKGSLTRRTEDGLACLLGSVENSTCNCISYSGLPALHDLFSGLYL