Scaffold Ga0307509_10000084

Overview

Basic Information

• Taxon OID: 3300031507
• Scaffold ID: Ga0307509_10000084
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 131262
• Total Scaffold Genes: 112
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 79 (70.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.0356
  • Long. (^o): -122.86

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001784	Metagenome / Metatranscriptome	635	Y
F020218	Metagenome / Metatranscriptome	225	Y
F048505	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307509_1000008416	F048505	AGGAG	MNAMNTALNTLDSGLKAVACGMGALAITAVMSWSFVQSTSTAPGATPTVKMAKLTIQQRHVWFGQSQPAVLVD
Ga0307509_1000008463	F020218	AGGAG	MPFSRNSLLASALATTCLVGALTAAPAHATGAIPDYFFKEWTVSKNCTEQHAGLAAQVQTGLKFKISKDAAAADGSYVFEAEDVGQQHWAANWNGMKLQYRAGTPMSVLPADFECIPGQEATSPFLAMSNYVQTAEPYYEFGHWYGTAKIRGQLEHVLIFPSNAATGPKAVIVMQSAQPGTIVKLDDNGVIHMD
Ga0307509_1000008467	F001784	GAG	MGQVIHVAFGTEREWQQTHEKTVDGLVTIGSLFGDDEKLMRAKGDCVYQVLREIVEDVPSIQVKTRLPDNLSPEQLDALTRAIKDAALQGIEIAMTHSVQVLMESIYDLCTSKLHTHGR