Scaffold Ga0307509_10000003

Overview

Basic Information

• Taxon OID: 3300031507
• Scaffold ID: Ga0307509_10000003
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 577578
• Total Scaffold Genes: 499
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 387 (77.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.0356
  • Long. (^o): -122.86

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063732	Metagenome / Metatranscriptome	129	Y
F090858	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307509_10000003136	F063732	N/A	MTRAVHTDVGTTNDGPQSAPPVDALPLDRKRLLTAFALTPLLAGFYPAIFLAEPSIMPIGLLLAYASTVLFGIPLVVYFNRRKVREWWLYIAGGTACSLPTVLLYALAPLPDHLQPFGAIPVMGVLFWGGSSGVVFWMIGIAGDSAVSLRSLFDPVSSKK
Ga0307509_10000003319	F090858	GAGG	VRMNNQGAFDIAVLHLLNQAHGCVSSSGKGQYRGTRGGKNAIGALIPDHLYWNSMEGKTVQQMLVATGPGYDKLREHLQGVSPRLLSELEDMHDRVGKCLPSLFRDIVLDGCPRVAQSFSLSLRMIRLWGAYRKIPGPQMTPLPKPAIVPAVVVLSSPFSTEKRELSVGSQESVAAAG