Scaffold Ga0272434_1139828

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1139828
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1502
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012851	Metagenome	276	Y
F104575	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_11398283	F104575	GAGG	VGLRSWVKRLERLSEGKAVVIPQRDRTVKKFPQSAARDAFINLMDRMGAGEDAPPEHPLIAAARNSSDPKWANSIYAIEDPAAHVAPVEDLSEGARE
Ga0272434_11398284	F012851	GGAGG	MSVCSGIKADGGRCRAQAMRTSQWCIGHDPDQAEARRRRASKGGKRGGRGRPIAELGALRDENSDIRRRLLDGELLPNVAAVAVQSINTDIRAVGAALKAREQEELVARLEALEEQLERGARRGA