Scaffold Ga0272434_1063868

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1063868
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2871
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057010	Metagenome	136	N
F059497	Metagenome	133	Y
F078020	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_10638681	F059497	N/A	MLIEDIDREIIYNTQCELNVLDVAFIDVSAQNLENIKVKLSSKYQNFLDVFDRAQVDKLSSHRSYDHKIKLTNDVT
Ga0272434_10638682	F078020	N/A	MRFFFDHLISAXKDAVLTLNIKKFFFEAVEVSRXSTLRAELIEEFDNRDHFECEALTDIEKTEMRASNXFKKTMTSFCIFSSISFLFIQSFSNMTLXXFISAINIETVNFLXLSTVRLSRILXVIIFFVSFSSYSLINFSLASCMNXISSFXHI
Ga0272434_10638683	F057010	N/A	MSHFFKERFEASFFIVKDNDSFAEIITSSMIMKALKKRCEELKVRLQAREITSSSSIYSERSRFQKILDSSLFTDEKNSIXENXYKKVQNKLKINVNLFSSKRVKLSYVHFRLFDDAAEIIQSRREHDCFNSYKIVNELLKKLAQLFNDSDKEVNFCRNYYDLIQEQKKFSKFYTQFQRLFFYLDYQEKQSIINLKNKINFRLQFAXITQLIQLSTLKEIRFYLIRLNNDQRAIQEIKNREAMIKAQTTKQIIFAEKSIKAIRRIIEMKMTDQFKSRDAVLTSVKENDLLNENCFLCHKSDHTSKECLNRSFRINALNDEFDHSLNFNSESDSKN