Scaffold Ga0272434_1029652

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1029652
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4818
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039410	Metagenome	163	Y
F094620	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_10296521	F094620	N/A	VYHSEINDQSKRANQDVERELRIYCNYMQNDXAKXLSMMKFSNNFNTFSTILMISFYFNKDFHSXMSFNSDTTDYKTTHQRIEARKINDIVTXMSKLLIFDYQQLKKIKQITEAQMNKHRXNVIYEVNDQVXLIFKNIKITRSCKDLKDKQLNFYSITVKVEIFYHLQLSKSMKHIHSVFSLKCLQSSSNDFLSKQHSEFFRSMIIEENKKHXKVDDILNFRQYKERLQYKIKXIEINCNDEXYYVDKEKFNDSKKVLNEFHKLYLNKLY
Ga0272434_10296523	F039410	AGCAG	MSSKFXVVSLIEETFRAFKSHXVLYAIFLLMFVMNRAKTSILFFFERFNSVLNEATSMLXIENDSFXAVIEMSRLSIVEVLVXVIEESEVDRDQLECFELSEIEKIEIEVFNXFEKTMTSFCIFSNISFLFIQSLLNMTSXXSISAINIDTINSLXLSMMRLSRILXVMIFLDIFSS