Scaffold Ga0272434

Basic Information
Taxon OID	3300031473 Open in IMG/M
Scaffold ID	Ga0272434_1008029 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031473 Open in IMG/M

Scaffold ID

Ga0272434_1008029 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11704
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (23.08%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

11704

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (23.08%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.5	Long. (^o)	159.59	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.5

Long. (^o)

159.59

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019584	Metagenome	228	Y
F049323	Metagenome	146	Y
F078020	Metagenome	116	Y
F094620	Metagenome	105	Y
F096305	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100802910	F049323	N/A	MMKEMNEESAEQQKEVLRMTXRVQQRCARFKLDIASXLALIKLIRVRSELXLIQTCS
Ga0272434_10080292	F049323	N/A	MMKEINEESAEQREEVLRMTQRIQQKCARFKLDIASXLVLIKLIRIRSKL
Ga0272434_10080293	F094620	GAG	MMKFSNNFNTFSTILMISFYFNKDFHSQISFNSDTIDYKTTRQCIEARKIDDIITXMSELLIFDHQQLKKIKQIIEVQMNKHKRDIIYEVNDQVXLVFENIKIIKSCKDLKDKQLNLYSITVKVEIFYHLQLSRSMKHIHSMFSSKCLQSSSNDSLLKQHSELSRLIIIEENEKHXEVDDILNFRRYRERLQYKVKXIEINHDNEXYYVDKEKFDDSKKVLNEFHKLYLNKLH
Ga0272434_10080297	F078020	N/A	MQFFFDHLINAXKDAAFTLNIEKFFFKAVKVSHXRTLRAELIEEFDDHDYFECEALTDIEKTEMKAFNXFKKTMTSFCISSSISFLFIQSFFNMMSXXFISVINIETVNFLXLSTVRLSRILRVMIFFVSFSSYSLINCXDHA
Ga0272434_10080298	F019584	N/A	MIKAKTTKQIIFAEESVKATCKIIEMKMTDQSKSRDAVLTIIKENDLLIENYFLCHKSDHTSKECLNKSFRINILNDEFDHSLNFNSESDSKN
Ga0272434_10080299	F096305	N/A	MSRFFKECFEASFFIVKDNDSFTEIITSSITMKALKKRCKELKARLQAREIISSLSIYSERSRSQKILDSSLFTDEKNSIXKNXYEKVQNKLKINVDLFSSEXVKLSYVHFRLFNDAAEITQSRCERDCFNLYKIVNEFLKELS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272434_1008029

Overview

Ecosystem & Geography

Associated Families

Sequences