Scaffold Ga0272434_1006620

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1006620
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13864
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F002432	Metagenome	559	Y
F024448	Metagenome	205	Y
F048017	Metagenome	148	Y
F080690	Metagenome	114	Y
F094624	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100662010	F002432	N/A	MKFSDNFNIFSVTSMILFYFNKEFHSRMSFNSDTTDYETTHEQLEARKADDIVIXIKKLLSFNHQQLKKTKLIIEVQINKHKRDVTYKVNNXVXLSFRNVKTTRLCKDLKDKQLNFYKITAKVSIFYHLHLSVSMKHLHLMFSSKLLXSYSEDSLSEQHSESFRSITIEDNEHXEIDNILNFKRYXDQIQYKVKXKNLDRNDE
Ga0272434_100662013	F048017	N/A	MSLVNVSESAQRLEDHFQTILISDKVNVLSVESKTNLYQRVYIINQTDEFCSEYKQAMNDNKLKFHITKLKNCEIIDDVLFRKDLLXVSENMHTKLLQEVHNQSSISYFDNKXIINLVQRFYYXSNHXTTIQXYI
Ga0272434_10066202	F094624	GAG	MKHYLQVFVNYMQNDXAKXLSEVKFIINNASSLITLASFFLINSNQNLRLNFKFSESLLKNLTSQAXNKLINVEEFIKKMNKLTEHLHDEMLIAQIIYEFNVNLSRRSCFKYFVEDKVXLNVCNFSITHLVIKLNDYNIDFFKIKHVFKNNSLIIELNLSAFMKIYSIFHVTLLSHITSDFLSNQHQKLQELIIVKNDKKFXYVNNILNFKRDKCYNSSLLK
Ga0272434_10066206	F001951	N/A	MIMTKLRFIDLSRNEKERDEDTVETTVTEMMILEFKELLINAETLLTLMNETMMKTKQD
Ga0272434_10066207	F080690	N/A	MQELQNQVXQHDVITSFLFIVFSSSIYIELNSQFLAMITQIIVQILNNQSFFIIHLSVNFVAVIIASRFKKLLNISEYERNKDRLNAXKQSLIQRINLNDDHYFSHRVKIIYVESXLIIDKKIHNLINQYRVNDLCIIFIFADXXHKLHHYCNNSFKTEDVHLYLCETLKQDMNSFVDYYNLFYQKKKCSLMKDFSLIDCMKRNVNYFTQVIIFFXXNLNETQLFIFHQXIQAFSDINKK
Ga0272434_10066209	F024448	N/A	LIDTEAADYSFIDELITQNVCDHLQIESLTLIKAKLIXEFNDYYAKKLITHVIYLNLTVQDHTIDTTSMLITRLNQHQMILEKTXMNKIDLVIDMQIDSLQFSNFISSQKLIVLFSSNKIITKQKSLTSTQILKRFISSVITQLSEKSSSYSKIVKSFNSVNFASSFNSMNIAMIETAAYKSLVK