Scaffold Ga0272434

Basic Information
Taxon OID	3300031473 Open in IMG/M
Scaffold ID	Ga0272434_1005761 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031473 Open in IMG/M

Scaffold ID

Ga0272434_1005761 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15774
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (37.50%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

15774

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (37.50%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.5	Long. (^o)	159.59	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.5

Long. (^o)

159.59

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F017767	Metagenome	238	Y
F057011	Metagenome	136	Y
F064252	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100576115	F057011	N/A	LKENYFEKSFLIHDSLISQNNSFNLCSLINSDFVIYMLIHDKLVNKVCQKLEIQSILLAKEKLIRDYDEKLARKTITHKILLNLMIESHKKLTVSMLIVDIKHHEVILSKLXMNKNEILLNMKHDTIVFFDQLNTSISIFSISSNTKHLSXLQSTSIFSAAHSKISKMLKHSVSFFQKESFSI
Ga0272434_10057614	F017767	N/A	MSMSNDSFASESLTIECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCD
Ga0272434_10057615	F064252	GAG	LSLKKKQRSTNQSQSHQSMKSQASIENYTRQESSTLFNNDHYKFFKFLNSFIFIDEDESTXNSXRIKINDKLQTNVDHFDNKNICIIYVISRLEDDVAEHIFAXHXHDVLHSYISINELFEHLKEIYNELNRNQKYRREYNVLKQAEKSFNVFYFDFMKLFSYLKYNDCTLMNDLQNKINNRLQNTLSICSENFTSLIHLRIFLQDVNNKQRVNYQLCSQLRTVIIKVTIISDKCIATSSLMMTSIINYIKSTFSSIFESARSSIICYTCKTSNHLFKNCFQNKIDTSASCTFTSCLHEIIISKNKKNEKMFSFEDSKAKN
Ga0272434_10057616	F000597	AGG	VTFIKDAMKEMLISSTTSMSDDSFTSESLTIECILSSNEISYSLKSLIDIEAADYSFIDEVIAQIVYDQLQIESLTLIKAKSIQEFNDHYAKKLIIHVIYLNLTVQDHTIDTAFMLIT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272434_1005761

Overview

Ecosystem & Geography

Associated Families

Sequences