Scaffold Ga0272434_1005637

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1005637
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16102
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (11.76%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007840	Metagenome	343	Y
F017941	Metagenome	237	Y
F019584	Metagenome	228	Y
F026450	Metagenome	197	Y
F029296	Metagenome	188	Y
F049323	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100563711	F007840	N/A	MINAIKRQNNTRKSIESTARLIELLDDLQLIKYTSFISINRISDKESLLIARESNESRESINLQIKQQK
Ga0272434_100563713	F049323	N/A	MMKEMNEKSAEQREKVLRMTRRVQQKCARFKLNIASXLALIKLIRVKSEFXLIQTCS
Ga0272434_100563714	F026450	N/A	MSRLFKECFEASFFIVEDNDSFAEIITSSITMKALKKRCEELKAKLQARKIILLSSIYSERSKFQKILDSSLFIDKKNFIXKNXYEKVQNKLKINVDLFSSERVKLSYVHFRLFDDAAEIIQSRHERDCFNSYKIVDELLKELSQLFNDSNKEVNFHRNYYNLIQE
Ga0272434_10056372	F017941	N/A	MKIIDLKKNNDQSFYKQVLDVNEINENCTLLREAIARDKA
Ga0272434_10056375	F029296	N/A	MSELLIFNHQQLKKIKQITEVQMNKHKXDIIYEVNDQVXLIFKNIKITRSCKDLKDKQFDFYSITVKVEIFYHLQLSKSMKHIHSVFSSKYLXSSSNESLLKQHSELFRLMIIEENEKHXEVNNILNFRRYKERLQYKIKXIEINHDDE
Ga0272434_10056379	F019584	N/A	MIKAKTTKQIIFAEESVKAICRIIEMKIIDQSKSHDAVLTNVKENDLLIENCFLCHKSDHTSKECLNRSFRINTLDDEFNHSLNFNSESDSKN