NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1005563

Scaffold Ga0272434_1005563


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1005563 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16289
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018839Metagenome232Y
F039410Metagenome163Y
F055317Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_10055631F018839N/AMIMKVVTFDCLTSDLYAAIFIIAMFIESKDENLTELNDFMILLNEDDFSLSXV
Ga0272434_10055637F039410N/AMFRAFKLYXVLYVISLSIFFMNRANTSVXFFFEXFNSVLNEVMFMLQIENDFFXIIVETDCLSILEIFDXEIKVDEVDCNQLECFELREIEKFEMRVFNXFEKMMTSIHIFSNISFLFIQDFSNMTSXXSMSTINIEIVNFLXLSIMRFDRILXVIVFLNIFSSYSFINFFFVSDINXIFSSLHTLLTRLICMII
Ga0272434_10055638F055317N/AMKVXKKCIYALNKETDHLIEMKQRDKSEIQQLKAKLQAFTAIIINVIITAFLIVIYFERSKYHKILDSSMFTDEKNFTXKNXSLDIXKKLAINVDIFSNELYKLNYINSQLADDVVEITQVRCNLNCDNLYLTVNKLLKKLAQSFHDFDKKDNYRRKYINLIQESKKFSNFFNQFQQLYIYLKYQKNVLVINLKNKINSCLXIFXTAQMKSLIKLSDIXNYLIRLNNEHRAVXKIKNKLLKHDDSKIIISRATIAVQSSTSKSDXSKSRSAVLTNVKNADVLVEICFICHKSNHSFRECLNXSIKINAVDENYNHFELNTESEFKSKN
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