Scaffold Ga0272434_1005361

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1005361
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16866
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (9.52%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007840	Metagenome	343	Y
F025887	Metagenome	199	Y
F026450	Metagenome	197	Y
F079402	Metagenome	115	Y
F096305	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_10053611	F096305	N/A	MSCLFKERFEASFFIVEDNDSFAEIITSSMIMKALKKRCEELKARLQARKIISSSSIYSERSRFQKILDSSLFTDEKNSIXENXYEKVQNKLKINVDLFSSERVKLSYVHFRLFDDAAEITQ
Ga0272434_100536111	F025887	N/A	MSDNLFDFKLFIVDVILNSLEKIFKFFALINIEVIDMTFIDESLMSKLCKHFDIQSILLLKSKSIQSYNEIFD
Ga0272434_10053612	F007840	N/A	MINAIERQNNTRKSIESTARLIELLDDLQLIKYALFISINRISDKESSLIARESNRSRESINSQIKQQKRLHLLLSSIVLRSISFF
Ga0272434_10053615	F026450	N/A	MFRFFKERFEASFFIVKDNDSFAEIITSSMTMKALKKXCEKLKARLQARKIISSSLIYSERFRFQKIFDFSLFTDEKNSIXKNXYEKVQNKLEINVDLFSSERVKLSYVHFRLFNDAAKITQLRREHDCFNSYKIVDELLKELAQLFNDSDKEVNFRRNYYNLIQEQKKFSEFYT
Ga0272434_10053616	F007840	N/A	MINTIERQNNIRESIESTARLIELLDDLQLIKYESFISINRISDKESSLIARESNQSRESINFQIKQQKXLHFLLLSITLRSISFF
Ga0272434_10053618	F079402	N/A	MQNKLKMNKNHFSIKEMKIAYVKSXVSETMIKHIALRMRNMITNSFLEAKEILSIINKMYNDFNQHYMIQQQFLKLY