Scaffold Ga0272434_1004328

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1004328
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20569
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (17.65%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007840	Metagenome	343	Y
F008668	Metagenome	329	Y
F009377	Metagenome	318	Y
F029296	Metagenome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100432812	F007840	N/A	MIDAIERQNNTREFIKSTARLIELLDDLQLIKYTSFISINRISDKESSLIARESNRSRESINSQIKQQK
Ga0272434_10043282	F009377	AGAAG	MNALFFDHEMIKISINTELNAXINTHEVNDIVVFVKYMCQQHDIEIEIHNNMIQMLEDVNEINIMLKITQTRLQKENRDKNMIIHHLEVASSRQSTSISEDXFSKLIKLLDSSLFEDSTQNVNNXLSXMQNKLKINKNHFSIEELKIAYIESRVSEAAIKHIASRMQNIFLNSFLEVEEVLSIINKMYDDFNHHHTTQRQYLKLY
Ga0272434_10043286	F008668	GAG	MSFNSNTTDYKITYKRFEVRKVNNIIIQIKELLIFDHQQLKKMKQIIEAQINKHKRDVIYEVND
Ga0272434_10043288	F029296	N/A	MTRSMLISNRKINDIVIQMSELLIFDHQQLKKIKQIIEAQMNKHRQDITYEVDDQVXLVFENIKITRSCKDLKDKQLDLYSITVKVEIFYRLQLSRSMKHIHSMFSSKYLXSSSNNFLLKQHSESSRLMIIEENEEHXEVDNILNFRRYKERLQYKIKXIKINHNDEXYYVDKEKFNDSKKVLNKFHKLYLNKLH