Scaffold Ga0272434_1004277

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1004277
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20789
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (21.74%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007840	Metagenome	343	Y
F026450	Metagenome	197	Y
F078020	Metagenome	116	Y
F084912	Metagenome	111	N
F087978	Metagenome	109	Y
F094620	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100427715	F087978	N/A	MFSSKLLRFYSEDLLSEQHSESLRSITIKDDEHXEIDDILNFRRYQGXIQYKVKXKDLDKDNEXYYVDKEKFDDSEKVLNEFHKLYSSKSR
Ga0272434_10042773	F007840	N/A	MIDAIERQNNTREFIESTARLIELLDDLQLIKYTSFISINRISDKESSLIARESNQSRESINFQIKQQKQLHLLLLSIILRSISFF
Ga0272434_10042774	F026450	N/A	MSCLFKECFEASFFIVEDNDSFAEIITSSMTMKALKKRCEELKAKLQAREIISSSSIYSERFRFQKILDSSLFTDEKNFIXKNXYEKVQNKLEINVNLFLSERVKLSYVHFRLFDDAAEITQSRREYDCFNSYKIVDELLKELAQLFDDSDKEVNFCKNYYNLIQEQKKFSEFYTQFQRLFFYLDYQEKQLIVNLKDKINSQLXFAXITQLIQLSTLKEIHFYLIRLNNDQRAIQEIKNREAMIKA
Ga0272434_10042775	F084912	N/A	MTDQSKSRDAVLTNVKENDLLIENCFLCHKSDYTSKECSNKSFRINALDDKFDHSLNFNSESDSKN
Ga0272434_10042776	F078020	N/A	MQFFFDHLISAXKDAVLTLNIEKFFFKAVKADCXSTLRAELIEEFDDCDYFEYEALTDIKKTEMRAFNXFKKTMTSFCIFSSISFLFIQNFSNMTSXXFISAINIETVNFLXLLTVRLSRILXVMIFFVSFLSYSFINFSLASCMN
Ga0272434_10042779	F094620	N/A	MIFFYFNKDFHPRMSFDSDTTNYEIIRQRIEAKKIDNIITXMSELLIFNYQQLKKIKQITETQMNKHKQDVIYEVDDQVXLVFKNIKITRSCKDLKDKQLDLYSITVKVEIFYRLQLSRSMKHIHSVFSSKYLRFSLNNSLSKQHSKLSKLMIIKKNEKHXKVNNILNFRQYKERLQYKIKXIEVNYDDEXYYVDKEEFDDLKKVLNEFHKLYSNKLH