Scaffold Ga0272434_1004181

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1004181
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21252
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (21.74%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004755	Metagenome	424	Y
F020121	Metagenome	225	Y
F074204	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100418110	F020121	GAG	MLIAQIIYEFNVNLSRCSCFKYFVEDEVXLNVCNLSIARLAVKLNDHNIDFFKIKQVFKNNSLIIELNLSTFMKIHSIFYVILLSHIASDLLSNQHQKFQELIVIKNDERFXYVNSILNFKRDRCYNLSLLKYYIDXEDHFSTXKSFHLLNNCE
Ga0272434_100418115	F074204	N/A	MIVFYILHQAQFKVFTLALINSEVFAYVFMNKFFTQQHHLLLHQLIHFCRLQEFDDQVALIDDIIHVIEITMILNEYIERLFFYVIELNQYFIIMNLS
Ga0272434_10041817	F004755	N/A	LKELAELFNDSDKKVNFRRKYYNLIQESKKFSEFYTQFQRLSFYLKYHEKQLIIDLKDKINSHLXFIXINQLVQSDSLKEIHFYLIHLNNDQRVIQEIKNKVNLIKCVNDLSKIIFHKAVVTQSVNHSKSDHLKLHDAILTSVKEADVLVETCFICHKSDHSFRECSDXSTRINAVNNEYDRFEFNFDSNFNSKN