Scaffold Ga0272434_1004073

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1004073
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21815
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (15.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007840	Metagenome	343	Y
F019584	Metagenome	228	Y
F033266	Metagenome	177	Y
F074202	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100407310	F033266	N/A	MSSHSFTEERSEKFRNRFSQIFDTDSLKSRTRSSSAASFIHKDDESFAEMIISLMFYEIXKAXSLVLDKETDQLYKLNK
Ga0272434_100407317	F007840	N/A	MIDAIERQNNTRESIELTAKLIELLNDLQLIKYTSFISINRISNKESSLIARESNXSRESINFQIKQQKXLYLLLLSITLRSISFF
Ga0272434_100407324	F019584	N/A	LIQFNTLKEIRFYLIXLNNDQQAIQEIKNREAMIKVKTIKQIIFAEESVKATRRIIEMKMTDQSKSRDAVLTNIKENDLLIENCFLCHKSDHTSKECSNKSFRINALNDEFDHFLNFNSESDSKN
Ga0272434_10040734	F074202	N/A	VYEXSLFTCRKEIYMYVKKCLQLLYCXLKLQSLFLTKLLEKCASNFMKTVDCKMNCKTIYISFLLMSSCLFCSDNAFNLALLLNDDFFXKLVISKLRLHVEIELDFKEEVILRCSFFTAKDDNLDSSFNLKTATNFIKFLXFIIFYNDXSFFFNLFLSVKCDVTRSKXANVENQAFKSEVVIDLAVIDLAVVDLAVVDLAVLNNVDNESFLKFENLDYEDDMKRSTSSVSSFFSSDIVN