Scaffold Ga0272434_1003674

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1003674
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24012
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (24.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F008169	Metagenome	337	Y
F028368	Metagenome	191	Y
F081945	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100367420	F081945	N/A	MFSRSFTKEYFEEFRNRFSQISDADSLKSSSAASFIHKDDESFTEMIISLVFYEI
Ga0272434_100367421	F008169	AGAAG	LKTRLQVKESTSSDFIYSERSRSQKISDSSLFTDEKNFTXKNXYGKIQNKLEINVDLFLNERVRLSYIHSRLFDDTAEITQARCERDYVNLYKMIDNLLEKLAQLFNDLNKKINFRRKYYNLIQEFKKFNKFYTQFQRLSFYLDYHEKQLIINLKDKINSHLXFIXVNQLVQSDFLKEIHFYLIHLNNDQRVIREIKNKLKRVNNLSKTIFHKATIVTQSVDHSKSDQLKLRDAILTNVKKANVLVEICFIYYKSDHSFKECLDQSTRINAVNNEYDRFDFDFNFDSKN
Ga0272434_100367422	F028368	N/A	LCKLDEILLKENYFEKSFLIDTHLISQNQSFSLRSLINSDSVIYMIVHSNLVNKVYEKLKIQSISLTKEKLIRDYDEKIFKKIITHKILLNLIIESHKKLTVSMLIADINHHEVILSKFXINKNEILLNMQNDVIVFSNQLNTSISIFSISFNSKHSSXLQSSSFSSIIQTKTFMMLKQLVREESFSIQSINATSFKTLLNHSKRNKIKVFALFMMNINRKIAYNTQCNLNALNVSLINEMTQNLKDIKAKLSSKYHEFLNVFNRAQLNKLLSHRFYDHKIELINDSTLSHC
Ga0272434_10036743	F002432	N/A	MXKSLCRRLRITASLFTVYHSEIDNQSKXVNQDVERELRIYCNYMQNDXVKXISMMKFSDNFNIFSITSMILFYFNKEFHSRMSFNSDKTDYETTHERLEARKADNIVIXMKELLSFDRSQLKKMKLIIKVQINKHKXNVIYEVDDXVXLSFRNVKTTRLCKDLKDKQLNLYQITAKVNIFYHLHLSVSMKHLHSMFDSKLLQSYSKDSLSEQHSESLRSITIEDDEHXKIDDILNFRRYXDXIQYKVKXTNLDRNNEXYYVDKEKFDDSEKVLNEFHKLYSNKLR