Scaffold Ga0272434

Basic Information
Taxon OID	3300031473 Open in IMG/M
Scaffold ID	Ga0272434_1003673 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031473 Open in IMG/M

Scaffold ID

Ga0272434_1003673 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24022
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (24.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

24022

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (24.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.5	Long. (^o)	159.59	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.5

Long. (^o)

159.59

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F019584	Metagenome	228	Y
F024448	Metagenome	205	Y
F026450	Metagenome	197	Y
F028667	Metagenome	190	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100367319	F026450	N/A	MTSSFIVEHRSSLDFFLLKHSFNSISSFFFIMSRLFKERFEASFFIVKDNDSFAEIITSSMTMKALKKRCEELKARLQAREITSSSSIYSKRSRSQKILDSSLFTDEKNSIXENXYEKVQNKLEINVNLFSSEXVKLSYVHFRLFNDAAEITQSRRERDCFNSYKIVDELLKELAQLFDDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQQLFFYLDYQEKQLIVDLKNKINSXL
Ga0272434_100367320	F019584	GAG	LIQLSTLKEIRFYLIQLNNDQRAIXEIKNREAMIKAXTTKQIIFVEESVKATRRIIEMKMTDQSKSRDAVLTNVKENDLLIENCFLCHKSDHTSKECLNRSFRINALDDEFDHSLNFDSESDSKN
Ga0272434_10036734	F028667	N/A	MCRXYKIIYFIYSENSQEILQIYQIYLSIFLTMTRDFESVKSXTAHLLRSTASRRVFIISFDVSAESQNVTTSXDINMSQQLRQXVHDQLNEIIKMLIELRDQXNMTLKLNKQXIIVQVEHDKRLNQLEIKQMIIDALEETNKRYQEKMLNLKNKLKEVLHSTNQSRSHQSTESQVSTKSLSRQSIENHTXHESFTLFDNDHHKSFKFLNSFIFIDEDESTXDSXRIKINDKLQANVDHFVDETICIVYVISRLEDDAAEHIFAXCCHDALHFYISIYKLLEHLEEIYDNQNKNXKCRREYNALRQADKLFNVFYFNFMKLFSYLEYDDCILMNDLQNKINNRLQNALSICLKDFITLHCLKSFLQNVNNRQRVNYQLXSERCMIIVKVTVVSDKCAATSLSAMMTLIVKYVKSTIFSTSKSVRSFIVCYICKILDHLFKNCSQNKINTLTFHAFISRLHEIVILKNKENKKMSFKNSEAKN
Ga0272434_10036735	F024448	N/A	MKEMLISSMMSMSDDSFASESLTIECVLSSNKISYSVKLLIDIEAADYSFIDEVIVQIVCDQLQIKSLTLIKAKSIQEFDNHYAKKLIIHIIYSNLTVQDHMIDTASMLITQLNQHQMILEKTXMNKIDLVIDMQIDFLXFSNFILNLKSIVLLTSNKIITKQKSLTSTHILKRSFTTSQLSLKSFSFSQFNEKSVKLIEQSKSRDAVLFSINFKSTFSLKPAFSSMNISMIETAVYRMLVK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272434_1003673

Overview

Ecosystem & Geography

Associated Families

Sequences