Scaffold Ga0272434_1003638

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1003638
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24235
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (17.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F004755	Metagenome	424	Y
F008115	Metagenome	338	Y
F057010	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100363810	F004755	N/A	MILTLSFYLNYYKKQLIINLKDKIHLHLRFIXVDQLVQSDSLKEIYFYLIHLNNDQRVIQEIKNKIKCINDVSKTIFHRATVIIQQSFNHSKSDHLKLHDAILTNVKEADILVESCFVCHKSDHNFKKCLNXSTKINAVNKEYDRFNFDSNFDSKN
Ga0272434_100363815	F008115	N/A	MLXNVYQLHDLLSSIISNRDSQFISIMXQSFCKXLKIKVNLSIIYHSEIDDQSKRANQDVECELRIYCNYMQNDXVKXLSMMKFSDNFNTFSTILMISFYFNKDFHSXMSFDSDMTDYETTRQRIEARKIDDIVIXMSELLIFDHQQLKKIKQITEAQMNKHKRDVIYEVDDQVXLVFENIKITRSCKDLKDKQLDLYSITVKVEIFYRLQLFRSMKHIHSMFSSKCLQSSSNDSLLRQHSELSRSLIIEENEEHXKVDNILNFRQYKERLQYKIKXIKINHDDEXYYVDKEKFDDSKKVLNEFHKLYLNKLH
Ga0272434_100363818	F057010	N/A	MTLSSIVEHCSSLNFFLLKHSFNSISSFFLIILRLFKECFEASFFIVEDNNSFAEIITSSMTMKALKKRCEELKARLQAREIISSSLIYFECSRFQKILDSLLFTDEKNSIXKNXYEKVQNKLKINVDLFSSERVKLSYVHFRLFDDAAEITQSRRERDCFNSYKIVDELLKELAQLFNDSNKEVNFRRNYYNLIQEQKKFSEFYTQFQRLFFYLNYQEKQLIVDLKNKINFRLRFAXVTQLIQLSTLKEIRFYLIQMNNDQRAIQEIKNREAMIKAQTTKQIIFAEESVKAIRRIIEMKMTDQSKSRDAVLTNVKENDLLIENCFLCHKSDHTSKECSNRSFRINTLDDEFDHSLNFDSESDSKN
Ga0272434_10036389	F002432	N/A	MXKSLCKRLRITASLFKAYHSEINNQSKRVNQNVERELRIYCNYMQNDXVKXISMMKFSDNFNIFSITSMILFYFNKEFHPXMSFDSDTTDYETTCEQLEARKANDIVIQMKELLSFDRQQLKKTKLIIEVQINKHRRNVTYEVDNXIXLSFKNIKTTRLCKDLKDKQLDLYQITAKINIFYHLHLSVSMKHLHSIFSSKLLRLYSEDFLSKQHSESLRSITIEDDEHXKIDDILNFRRYQGRIQYKVKXKDLDRNDEXYYVDKEKFDNSEKVLNEFHKLYSSKSR