Scaffold Ga0272434_1003586

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1003586
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24526
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F008668	Metagenome	329	Y
F069514	Metagenome	123	Y
F094626	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100358611	F001253	N/A	VTFIKDVIKDVLISSTMSSSNDFFASKSLTTEYILSSNEISYSLKSLIDIKAANYSFIDELITQNVCDHLQIESLSLIKLKSIRRFNDHYAKKLITHAIYSNLTVQDHMKRFIFMLITQL
Ga0272434_10035863	F008668	N/A	MMKFNDNFNIFLITSMTFFYFNKKFHLRMSFDSDTTNYETIHERLEARKADDIIIQMKELLNLNHQQLKKTKLIIEVQINKHR
Ga0272434_10035864	F094626	GAG	MMKQVNKHRKEVNYEIKSKMFLNERNIITARSFKKLDDKMLDSFINLDFIDSSYKLKLSESMHVHDVFYSDLLRSVVDDFLPDQKNEFSDSIVINDENE
Ga0272434_10035865	F069514	GAG	MIEFVDNNTLFSVIFSISFFLNKDFHSHMSFELNVIKYESSCERLQTTKVENISEHMNKTLKFARESLVKT