NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1003370

Scaffold Ga0272434_1003370


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1003370 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25974
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (28.12%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007840Metagenome343Y
F024448Metagenome205Y
F061402Metagenome131Y
F079402Metagenome115Y
F104131Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100337015F079402N/AMXNKLKMNKNHFSIEEMKIAYVKSXVSETMIKHIAFRMKDMITNSFLKAEEILLIINKMYDNFNXHHMT
Ga0272434_100337018F061402N/AMQDDXFAXLFMIEFIDNNAISLSIEQSTFFLNKNFHSHISFDSNSIEYEITXARIEVDKAKNIFEHMK
Ga0272434_100337026F024448N/AMKDVLISSTMSMSDNSFASESLITECILSSNEISYSLKSLIDIKAADYSFIDEVITQIVCDQLQIKLLTLIKAKSIREFDNHYAKKLIIHAIYSNLTVQDHMIDTASMLITQLDQHQMILEKTXMNKINLIIDMQIDSLRFSNFTSSQKLIVLLSSYRTITKQKRLTSTHILRRLFTFVI
Ga0272434_100337031F007840N/AMINAIERQNNTRESIESTARLVELLDDLQLIKYTSFTSINRISDKESSLIARESNRSRESINSQIKQQKRLYLLLSSIILRSISFFQKTLVQFNLFFLSHHVSSL
Ga0272434_100337032F104131N/AMSRLFKEHFKVSFFIVEDNDSFAEIITSSMTMKALKKRCEELKARLQARKIISSSSIYSERSRFQKILDSSLFTDEKNSIXENXYEKVQNK
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