Scaffold Ga0272434_1003336

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1003336
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26219
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (28.12%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032884	Metagenome	178	Y
F051591	Metagenome	143	Y
F104135	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100333615	F051591	N/A	MLDAIALYFRYQSSHVISLRIVTTDLNLLLCASRKGKTDSDLIRNAVLLXNNVVLCAIFKHKRVXFRFLRQYTVFCAVLKLIDNLFFSYEFALQFINQITVXIDNFFFCVDELSFRRRFXPAXAQKFRFSIFDLRRSHLXSYXVEXKLVLIIRLCFITCQSIXYIICFDRLLSSVVFFAIHIQYTCLVHSMHXC
Ga0272434_100333628	F104135	N/A	MIQTFAVHLNILKHQLSLYSDEYKXTHLFIKLRSELHVIITNVQLISITXDALIDLVAXLKTNLRKEHILSLKXLXDKNLHDRDKINKKTHSKXKNFHQSTKFNSSLKTSLHTSSHYSKNLFNITCYTCNQKSHYFTDYKDKKIKNKSKEFDANXVFIDLMLHVSCFKISRKDKLLTNASNHXEKNKKFSS
Ga0272434_10033365	F032884	GAG	MTIRNERVECKECEETKKNESTMMRVEKECLYVQTINVIDQXEDIKQRFXSDYM