Scaffold Ga0272434_1003289

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1003289
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26547
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (4.76%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F005901	Metagenome	386	Y
F019584	Metagenome	228	Y
F048685	Metagenome	147	Y
F049323	Metagenome	146	Y
F094620	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_10032891	F019584	N/A	RLNNDQRAIREIKNREAMIKARTTKQIIFAEESVKAIRRIIETKMTDQSKSRDAVLTSVKENDLLIENCFLCHKSDHTSKECSNRSFRINALDDEFDHSLNFDSESDSKN
Ga0272434_100328914	F048685	N/A	VPRDLDDECIQYQRTIILTLNXMKIADLKKNNDQSIYKQVLDANEINKNCMLLREAIARDEVQYEDIKLKNCXTQNEILFHDSQL
Ga0272434_100328916	F000597	N/A	MSMSDDSFASESLTIEYVLSSNEISYSLKSLINIEAADYSFIDEVTVQIVYDQLQIEFLTLIKAKSVREFDDHYAKKLITHVIYLNLTVQDHTIDTASMLITRLDQH
Ga0272434_100328917	F005901	N/A	VISRLEDDAAEHIFAXHHHDALHSYISIYKLLKHLEEIYENQNKNRKCHHKYNVLKQADKLFNVFYFDFMKLFSYLNYDDCTLMNNLQNKINNRLQNALSVCFEDFASLHCLKIFLQDVNNKQRVNYQLHSQFCTVIIKVTVVSDKCIATSLSVMTLIINYVKSIIFSIFKSDXVKSSIICYICKTSKHLFKNCSQNKINTFASHAFTSHLHEIIISKNKENKKMSFKNSETKN
Ga0272434_10032894	F094620	N/A	MXQSLCKRLKIKVNLSTVYHSEINDQSKQANQDVECKLRIYCNYMQNDXAKXLSMMKFSDNFNTFSTILMISFYFNKDFHSXISFNSDTTDYKTTRQHIETRKIDDIIIXMSELLIFNHQQLKKIKQITEAQINKHRRDVIYEVDDQVXLVFENIKITRSCKDLKDKQLDFYSITVKVEIFYRLQLSRSMKHIHSVFSSKYLRSSSSDFLLKQHSEFSRSMIIEENEEHXKVDDILNFRXYRERLQYKIKXIEVDHDDEXYYVDKEKFDDLKKVLNEFHKLYSNKSH
Ga0272434_10032897	F049323	N/A	MMKEMNEESAEQTKRSAENDSKKCARFKLGIASXLALIKLIRVRSELXSIQTCS