Scaffold Ga0272434_1003255

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1003255
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26757
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (15.62%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010214	Metagenome	306	Y
F036035	Metagenome	170	Y
F102180	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100325513	F010214	N/A	MKVSVLFDYDASSLLCSSLTIFYTTMSRFDSQFEDERRFLCIRDARDCNIHRAVFSYSMIVIHXAEKYVMKERCTRXEDKVXLYXVILSFSXFDLCHVDVEXIVSIDMQSRSFDVXLXSMKENAFXSFSXALDFSCE
Ga0272434_100325516	F036035	N/A	MKDRTKDDAMQRKHHELKKAFRNHECDNSNHLNNILNKHTESISDYDVIKELNERERK
Ga0272434_100325518	F102180	N/A	LRRLTLIITHHDELKELVAKMKHLADVATANQEYHEKIYKVYNDNQTSLKTVKVMISIKD
Ga0272434_10032552	F010214	GAG	MRVSVLFDYDASSLLCSSLTIFYTTMFRFDSRFEDERRFLCIRDARDCNIRRAVFSYSMIVIYXAEKYVMKERCTRXEDRVXLYXVTLFFSXFDLCHVDVEXTVSIDVQSQSFDVXLXSIKENAFXSFSXALDFSRE
Ga0272434_100325525	F010214	GAG	MKVFVLFDYDASSLLCSLLTIFYTMMFRFDSRFKDERRFLCIRDARDCNVRRAVFFYSMIVIHXAEKYVMKERCTRXEDRVXLYXVILFFSXFDLCHVDVEXTVSIDVRSQSFDVXLXSMKENAFXSFSXALDFSCE