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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031473 Open in IMG/M |
| Scaffold ID | Ga0272434_1003064 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 28395 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (16.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.5 | Long. (o) | 159.59 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003820 | Metagenome | 466 | Y |
| F024448 | Metagenome | 205 | Y |
| F028368 | Metagenome | 191 | Y |
| F074203 | Metagenome | 119 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272434_100306412 | F024448 | N/A | MSMSDNSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVYDQLQIEFLTLIKAKSIREFDDHYAKKLITHVIYLNLTVQDHTIDTASMLITXLNQHQMILEKTXMNKIDLVIDMQIDFLRFSNFNPTSQKSIVLFSSHKTITKQKSLTSTHILRRLFTFVTF |
| Ga0272434_100306419 | F003820 | N/A | LQDALLICLKDFTTLHCLKSFLQNVNNKQRVNYQLXSECCTIIIKVIITSEKRATSLSAVTTSIIKYIKLTIFSTSESVRSSIICYICKISDHLFKNCFQNKINTSTSYVFILRLHEIIILKNKENEKMTFFFENSEAKN |
| Ga0272434_10030644 | F028368 | GAG | LCKLDEILSEENYFEKSFLIDTHLIFQNQSFSLCFLINSDSVIYMIIHSNLVNKVCKKLKIQSISLTKEKLIKDYDEKIFKKIITHKILLNLIIESHKKLTVSMLIVDIDHHEVILNKLXMNKNEILLNMRNDVIVFSNQLNTSISIFSILLNSKHSSXLRSTLFSSITQTKISMMLKRLISITVQKKSFSIQSINTASFKILLNHSKKNKIKVFALFMMNINRKITYNTQCDLNALNISSINEMT |
| Ga0272434_10030645 | F074203 | N/A | MLSHLLTEECFEEFRNRFSQISDADSLKSQTKSSSATSFIHEDDESFIETIIFLMFYEIXKTXSLALDEETDRLYKLDKQQEDEIKELKTKLQAKENTSSDFIYSERSRSQKISNSSLFTDEKNSTXKNXYEKFQNKLEINVDLFSNKXVKLSYVHFRLFNDAAEIIQSRREHDYVNLYKIIDDLLKELAELFNDSNKKVNFRKEYYNLIQESKKFSKFYTQFQQLSFYLKYHEKQLIIDLKDKINSRLQFIXIDQLVQSDSLKEIHFYLIHLNNNQRVI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |