Scaffold Ga0272434_1002893

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1002893
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29818
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (16.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F024448	Metagenome	205	Y
F037509	Metagenome	167	Y
F064252	Metagenome	128	Y
F086376	Metagenome	110	Y
F087979	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100289310	F002432	N/A	VHACNIYCNYMQNDXIKXISMMKFSDNFNIFLITSMIFFYFNKEFHSRMSFNLDTTDYKTTHERLEARKADDIVIXMKELLSFNHQQLKKTKLIIKVQINKHRXNITYEVNDXIXLSFKNVKTTRLCKDLKDKQLNLYQITVKVSIFYHLHLSLSMKHLHSMFSLKLLQSYSEDFLSEQHSESLRLITIKDDEY
Ga0272434_100289317	F037509	N/A	MILISLFIQVHSTDNKMNIKKFMYLIINDIERQNNIKKSIKSMRIYDHMIAKEFIAQSVASVQID
Ga0272434_100289322	F064252	N/A	MNQLQSQQSTKSXASIKNYTXRESFTLFNNDHHKFFKFLNSFIFIDEDESTXNSXRIKIDDKLQTNVNHFNNENICIVYVISRLEDDIAEHIFAQCXHDALHSYILINELFEHLKEIYDELNRNRKCCRKYNALRQADKSFNVFYFNFMKLFNYLDYDDCILMNDLQNKINNRLQNALSVCSENFTSLTRLRIFLQNVNNKQRVNYQLRSERCTVIIKVMIISDKRAATSLSVITLIINYVKFIISSISESARSSIICYTCKTSNHLSKNCFQNKINTSAS
Ga0272434_100289323	F024448	N/A	MSMSDDFFASEFLTTECVLSSNEINYSLKSLIDIEAADYSFIDEVIVQIVCNQLQIKSLTLIKAKSIXKFDNHYAKKLITHVIYLNLTVQDHMIDTAFMLITQLNQHQMIFKKTXMNKINLVIDMQIDFLXFSNFISSQKSIVLFSNNKTITK
Ga0272434_100289329	F087979	N/A	MKKKNENSTFIHMNQAESRLNNSFIDLRLQKFMHITEIIETELLRLN
Ga0272434_10028939	F086376	N/A	MTRSSESASIARYELXNARRELLLSQNQTASEEEDMNMSLNTEEKNTNALFFDHEMIKISINTELNAXISIHEADNIVVFIKYMCQQHNIEIEIYNDMIQMLEDVNEINIMLKITQTRLQKENKDKNVIIHHLKAALSQQSTLISED