Scaffold Ga0272434_1002740

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1002740
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31408
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (12.20%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F003820	Metagenome	466	Y
F007840	Metagenome	343	Y
F018839	Metagenome	232	Y
F019584	Metagenome	228	Y
F021896	Metagenome	216	Y
F057010	Metagenome	136	N
F059497	Metagenome	133	Y
F071806	Metagenome	121	Y
F078020	Metagenome	116	Y
F080690	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100274010	F001253	GAG	VTFIKDMMKDVLISSTTSSSNDFFASKSLTTECVLSSNKINYSLKSLIDIEAADYSFINELITQNVCNHLQIESLSLIKLKSIRKFNDHYAKKLITHAIYLNLTVQDHMKRFASMLITQLDQHQMILEKTXMNKIKVTIDIKDDHL
Ga0272434_100274011	F018839	N/A	MMIAKVVTFNRLTSDLYAAVSIIAMFIESKDENLIELNDFTILLNEDDFSLS
Ga0272434_100274014	F007840	N/A	MIDAIERQNNIRKSIESTAKLIELLDDLQLIKYTSFISINKISDKESSLIARESNRSRESINS
Ga0272434_100274018	F059497	GAG	MSIEDIDRKIVYNTQCKLNVLDITFIDASAQNLEDIKVKLSSKYQNFLDVFDRAQVDKLSSHRSYDHKIELTNDVTSSRCRAYQMLFYKL
Ga0272434_100274019	F078020	N/A	MQFFFDHLISAXKDAAFTLNIEKFFFEAVEVSRXSTLKAEXIEEFDDRDHFECEALTDIEKTEMRASNXFEKTMTSFCIFSSISFLFIQSFSNMTSXXSISAINIETVNFLXLSTVRLSRILXIMIFFVSFSSYSLINFSLASRMSXISSFXHIXLTSFVXIKM
Ga0272434_100274020	F057010	N/A	MSRLFKERFEASFFIVKDNNSFAEIITSSMTMKALKKRCEELKARLQAREIISSSSIYSERSRSQKILDSSLFTDEKNSIXENXYEKVQNKLEINVDLFSSERVKLNYVHFRLFDDAAEITQSRCERDCFNSYKIVDELLKELAQLFDDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQRLFFYLDYQEKQLIVDLKNKINLRLRFAXVTQLIQLSTLKEIRFYLIXLNNDQRAIREIKNREAMIKVQTTKQIIFAEESVKATRRIIEMKMTDQSKSRDAVLTNVKENDLLIKNCFLCHKSDHTSKECLNRSFRINALDDEFDYSLNFDSESDSKN
Ga0272434_100274022	F019584	GAG	MIKARTTKQIIFAEESVKATCKIIEMKMTDQSKSRDAVLTNVKENDLLIENCFLCHKFDHTSKECLNRSFRINALNDEFDHSLNFDSESDSKN
Ga0272434_100274023	F078020	N/A	MRFFFDHLINAXKNAAFILNIEKFFFEAVEVSHXRTLKAELIEKFDDRDHFECEALTDIEKTEMKAFNXFKKTMTSFCIFSSISFLFIQSFSNMTSXXSISAINIETVNFLXLSTVRLSRILXIMIFFVSFSSYSLINFSLASRMSXISSFXHIXLTSFVXIKM
Ga0272434_100274024	F059497	GAG	MSIENIDREIVYNTQCELNVLDVAFIDVSAQNLKDIKVKLSSKYHDFLDVFDXAQVNKLSSRRLYDHKIKLTNNVTSSRCRACXMSLYKL
Ga0272434_100274037	F021896	N/A	MKNNLESEDFFKNVKCNLTFLNSDKEYIFSDEMSEXDSYFTIVIDESSIKVHEI
Ga0272434_100274039	F071806	N/A	MMLQLQIIILNSVQLHLFLIFSVFLLTLAFMNLEVKEFNVEDIESQLDQDILNLNEDSADTFTQTLXE
Ga0272434_10027406	F003820	N/A	MKLFSYLDYDDCTLMNDLQNKINNRLQNALSVCLENFTSLHCLKIFLQNVNNKQRVNYQLRSQLCIVIIKVTVVSNKCVATSLSAMMTSIIEYVKLTIFSISESVRSSIICYICKISDHLFKNCFQNKIDISTSHAFTSRLHEIIISKNKEKKKMSSSSKNSETKN
Ga0272434_10027408	F080690	N/A	MKLSHNLLIDDECAVEQFAQSVIENSVEIFRAMQELQNQVQQHDVITSFSFIVFSSSVYIKLNSQSLATIAQIIAQILNNQSLFIIHSSANFVAVIIASRFKKLLDISEYEKDKDXLNAXKQSLIQRMNMNDDHYFFHHVKIIYVKSRLIINKKTHNLMSQYRVNDLCIIFIFADXQHKLHHCCNNFFEMKDAYLYLCKTLKQNMNSFANYYNLFYQKKECSLMKDFLLINCLKHNVNYF