Scaffold Ga0272434_1002469

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1002469
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34542
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (23.53%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F025887	Metagenome	199	Y
F036504	Metagenome	169	Y
F044227	Metagenome	154	Y
F055317	Metagenome	138	Y
F057010	Metagenome	136	N
F096307	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_10024691	F036504	N/A	LNSLIFIETDNSIXETXNIKIADKLDVNANHYSTEKIRIVYVIFKLKDNADQQIYAKHHVDAFSFYQSLSELLKHLKEIYEDQNLIRKCRRKYVALKQLNKSFSSFYSEFTRIFSFLNYDDITLMNDIQNKINNRLQNALSVCLIEFSSLDKLKIFLQDVNNKQQVNYQLRDEQXTVKSIAASKKRFVSSLTSASTTSYIQLATFFILESEXSRMSIICFNCKVLNHLSKNCSQLKTSTLTSCAFTSRLNE
Ga0272434_100246912	F025887	N/A	MSDDSFNFKLFTVDVILSSLKKIFRFFTLINTEVIDMTFIDESLMSKLCEHFDIQSISLSKSKLIQLYDEISD
Ga0272434_100246913	F044227	N/A	MQLQLKSSNDETCTHALLELIASAIKNATRHQLLKLLNNHCYYEEFQSSCKNDDENKTSEAI
Ga0272434_10024692	F057010	N/A	MTMKALKKRCEELKARLQAREIISSLSIYSEHSRFQKILDSSLFTDEKNSIXENXYEKVQNKLEINVDLFSSERVKLNYVHFRLFNDAAEITQSRRERDCFNLYKIVDELLKELAQLFDDSDKEVNFCRNYYNLIQEQKKFSEFYTQFQQLFFYLNYQEKQLIIDLKNKINSRLQFAXVTQLIQLSTLKEIRFYLIXLNNDQRAIXEIKNREAMIKAXTTKQIIFAEESVKATRRIIEMKMTDQSKSRDAVLTSVKENDLLIKNCFLCVMILVLSDSVF
Ga0272434_100246925	F096307	N/A	MLYIVVAQIDASLKEDVLKHKKDVDLKDVCDTKKCVCHRNLLTTRNTKKCVYLEDNRSXLEDAKEEKRCXVIFESNLSQI
Ga0272434_100246928	F000597	GAG	MISMSNDSFASESLTTECVLSNNEISYSLKSLIDIEAADYSFIDEVITQIFYDQLQIKSLTLIKVKSIXEFNDNYVKKLITHVIYLNLTVQNHTIDTAFMLITXLNQH
Ga0272434_100246933	F055317	N/A	LLEDLSLIQYAFVQNRLIESTIKNLRELLENQIDQENYDKESSXIASRSIALRNIFFVEQTYVFLFQSSSIVIHSTLFQTTLTFFTMTSKNTSDKDKAFVDFLQQTRSQAFSSIVSSQHASSFIAFDESNAETVIHNDMKVXKKRIYALNRETDNLVEMKQRDKSEIQQLKAQLQALTAITVNVVITAFLIVTYFERSRYHKILDSSMFTDEKNSTXENXFLDIREKLAINVDIFSNELYKLSYIHFRLADDVVEVTQVRRDLNCDNLYLTVNELLEKLAQSFHDSDKKDNYRRKYINLIQESKKFSDFFNQFQRLYIYLKYQKNVLVVDLKNKINPRLRIFXTA