Scaffold Ga0272434_1002082

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1002082
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39283
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (31.37%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007840	Metagenome	343	Y
F019584	Metagenome	228	Y
F104131	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100208248	F019584	GAG	MIKAQITKQIIFVEESVKATCRIIEMKMTDQSKSRNAVLTNVKENDLLIENCFLCHKSDHTSKKCLNKSFRINALNDEFDHSLNFNSESNSKN
Ga0272434_100208250	F104131	N/A	MFRLFKECFEASFFIVEDNDLFAEIITSSMTMKALKKRCKELKARLQAREIILSSSIYSERSKSQKILDSSLFTDEKNSI
Ga0272434_100208251	F007840	N/A	MIDAIEKQNNIRRFIESTAKLIELLNDLQLIKYASFISINRISNKESSLIARESNRSRESINFQIKQQK