Scaffold Ga0272434_1001965

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1001965
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41058
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (28.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024448	Metagenome	205	Y
F036504	Metagenome	169	Y
F046102	Metagenome	151	Y
F064252	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100196514	F064252	N/A	MIINTLEKINKRYQEKMLNLKNKLKEVLHSANQLXSHQSTESRVSTKSLFHQFIKNHTQYKSFTLFNNDHHKSFKFLNSSVFIDEDESTXNSXRIKINNKLQTNVDHFVNETICIVYVISRLENDAAKHIFIQRHHDALHSYISIYKLLKHLEEIYEDQNKNXKCRCKYNALRQADKLFNVFYFNFIKLFNYLDYDDCILINNLQNKINNCLQNTLSVCFKDFASLHCLKIFLQDVNNKQXVNYQLXSERYMIIIKVIVASEKRATSLSAVMTSIIKYVKSTIFSTSKSVKSSIVCYICKISDHLFKNCSQNKINTSASYVFTFRLHEIVISKNKENEKMTFFFKNNEAKN
Ga0272434_100196515	F024448	N/A	MKDVLISSTISMSNDSFASESLTTEYVLSSNKISYSLKSLIDIEAADYXFINEVIVQIVCNQLQIKFLTLIKAKSIREFDDHYAKKLITHVIYLNLIIQSHTIEIASMLITQLDQHQMILEKTXMNKINLVIDMQIDFLQFSNFTSSQKSIVLLSSNKTIMKQKSLTSTHILKRSFMSXF
Ga0272434_100196516	F036504	AGG	LNFRAKQRQADQSISRQDTQSAEQRVNQKEAHFQXESSTLSDNTNENDHHKFIKLLNSLIFIETDDSIXKTXNIKIADKLNVNVNHYSTKKIRIVYMIFRLEDDADQQIYAKHHVDAFSFYQSLSKLLKHLKEIYEDQNLIRKCRCKYVALKQLNKLFSSFYSEFTRIFSFLNYNNVILMNNIQNKINNCLQNALSVCLIKFSSLDKLKIFLQDVNNKQXVNYQLRDEQXTVKLIAALKKRFVSSSTSASVLTTSYVQLATFFTLESEXSRMSIICFNCKVLSHLSKNCSQLKTSTSTSCAFIFCLNEIIMSKEEKKLFTEKLKNEAKN
Ga0272434_100196517	F046102	N/A	MSSSNDLFASKSLTIECILSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRKFNDYYAKKLITYAIYLNLTVQDHMKRFTSMLITRLNQHQMILEKTXMNKIEMTIDMKDDCLQFSSFKAHIKAFIKAHSTVLSSKKIAIEQKSLIFTQILKRSIFSVIT