Scaffold Ga0272434_1001852

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1001852
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42968
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (17.07%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003820	Metagenome	466	Y
F004755	Metagenome	424	Y
F065268	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100185214	F004755	GAG	LSYIHSRLFNDAAEIIQTKSKRDCVNLYKIIDDLLKKLAQLFNNLNKKVNFCRKYYNLIQEFKKFNEFYTQFQRFFFYLDYHKKQLITDLKDKIHSHLQFIXINQLVQSDSLKEIHFYLICLNNDQRVIREIKNKIKRVDDISKTIFHKVTIVFQSADHLKSDHLKSRDAILTNIKEVDILVKSCFICHKSDHSSKKCLD
Ga0272434_100185239	F003820	N/A	MKLFSYLEYDDCILMNDLQNKINNRLQNALSVCSENFTSLTCLRIFLQDVNNKQRVNYQLRSQLRTVIVKVTVVSDKRAATSLSAVTTLIINYVKSILSFISESARSSIICYTCKISSHLFKNCSQNKINTSASCAFTLCLHEIIISKNKKNEKMSSFKDSEAKN
Ga0272434_10018528	F065268	N/A	MIRSTELESKSMSITCYELQNVERKSLLSQNXTASEEEDMNASLNTEEKNMNVLLFDHEMIKISISTELNAXINTHEADDLVAFIKYICQ