Scaffold Ga0272434_1001608

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1001608
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47569
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (20.41%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008115	Metagenome	338	Y
F037508	Metagenome	167	Y
F046102	Metagenome	151	Y
F057010	Metagenome	136	N
F070711	Metagenome	122	Y
F078020	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100160815	F057010	N/A	MTMKALKKRCEELKARLQAREIISSLSIYSERSRFQKILNSFLFTDEKNSIXKNXYEKVQNKLKINVNLFSSEXVKLSYVHFRLFNDAAEITQSRRERDCFNSYKIVNELLKELAQLFNDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQRLFFYLDYQEKQLIVDLKNKINSRLRFAXVTQLIQLSTLKEIHFYLIXLNNNQXAIQEIKNREAMIKAQTIKQIIFAEESVKATRRIIEMKMTDQSKSRDAVLTNVKENDLLIENCFLCHKFDHTSKECSNRSFRINALDDEFDCSLNFNSESDSKN
Ga0272434_100160816	F078020	N/A	MTKISMRFFFDHLISAXKDSAFTLNIEKFFFKAVEADHXSTLKAELIEKFDDHDHFECEALTDIKKTEMRASNXFEKTVTSFHIFSSISFLFIQSFSNMTSXXFISAINIETVNFLXLSTVRLSRILXIMIFFVSFSSYSFINFFLADCMSXISSFXHIXLTSFVXIKM
Ga0272434_100160824	F008115	N/A	LISQKCXKDIAINFITELSLSKDYNVICIIICYLIKEHHYVFCHXRDNDISVEETVXIMLXNIYRLHDLLSSIVSNKDSQFVFIMXKSLCKRLXIIASLFTAYHSKINDQTKRVNQDIERELRIYYNYMQNDXAKXISMIEFSDNVNTFSIISMISFYFNKEFHSXMSFNSDTTDYEITHEXIEARKADIIVIXMKKLLNFNLQQLKKTKLIIKAQINKHKRDVIYKINDQIXLSFKNVKITRSCKNLKDKQLDFYSIIVKVKTFYHLHLSTSMKHIHSMFSSKLLQSYSKDSLSEQHSESLRSITIKDDEHXKINDILNFRCYXDQIQYKVKXKDLDKDNK
Ga0272434_100160828	F037508	N/A	VNHYSTEKIHIVYVIFRLEDDADQQIYAKHCIDAFSFYQSLSKLLKHLKEIYEDQNLIQKCRCKYVALKQLNKSFSSFYSKFTKIFSFLNYDDITLMNNIQNKINNHFQNALSVCLIEFSSLDKLKIFLQDVNNK
Ga0272434_100160836	F070711	N/A	MKDVLISSMTSMSNDSFTSESLTTECILSSNEISYSLKSLVDIEAADYSFIDEVITQIVC
Ga0272434_100160845	F008115	N/A	MLXNVYXLHDLLSSIVSNRDSQFISIMXQSLCKXLKIKVNLSTVYHLKIDDQLKXANQDVECKLXIYCNYMQNDXAKXLSMMKFSDNFNTFSTILIISFYFNKDFHLXMSFDSDTTDYETTHQHIKARKINDIVTQMSKLLIFNHQQLKKIKQITEAQMNKHRRDVIYEVNDQVXLVFENIKITRSCKDLKDKQLNFYSITVKVEIFYHLQLSRSMKHIHSVFSSKCLQSSSNNSLLKQHFEFFRSMIIKENKKYXKVDDILNFRXYKERLQYKIKXIEINHDNEXYYVDKEKFNDSKKVLNKFHKLYLNKLH
Ga0272434_10016087	F046102	GAGG	VTFIKDAIKDVLISSTTSSSNDFFASKFLTTECVLSSNEISYSLKSLIDTEAVDYSFIDELIAQNVCDHLQIESLSLIKLKSIRKFDDHYAKKLITHAIYSNLTVQDHMKRFVSMLITRLNQHQMILEKTXINKIEMTIDMRNDRLQFSSFEAHIKAFIKAHSTVLLSKKIAIEQKSSIS