Scaffold Ga0272434_1001592

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1001592
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47937
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (13.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006206	Metagenome	378	Y
F008668	Metagenome	329	Y
F057011	Metagenome	136	Y
F096307	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100159210	F006206	N/A	MLVTLNYFEKSFLINASFISQSNSFKLCSLINSDFVIYMLIHDKLVNKIYQKLEIQFILLVKEKLIRDYDEKLARKTITHKILFNLTIKSHKKLTMLMLITDIEHYKVILSKFXMNKNEILLNIRHNTIIFSD
Ga0272434_100159220	F096307	AGAAG	MLYIVATQINASLKENMLKHKKDVDLKNVYDIKKCVCHRHLLTTHNTKKCVYLKDNKSXLEDAKKEKRCXVISESNLSQIQIRSRLNLD
Ga0272434_100159239	F057011	N/A	VLXLNLESQCIRRXQVXLIYIELXVRFXFKKLTISFRIIKKIEIIFLCSQIKVLSKENYFEKSFLINASFISQSNSFSLRSLINSDFVVYTLIHDKLINKVCQKLEIQFILLVKEKLIRDYDEKLVRKTITHKILLNLTIESHKKLTMSMLIADIEHHEAILSKFXMNKNEILLNIRHDTIIFSDSLNISISIFSVSLNTKHSSXLRSTLIFSAAHSKIFKMLKHSVSFIQKESFSIQNIDVIFF
Ga0272434_10015926	F008668	N/A	MIKFSENFNIFSIISMTSFYFNKSFYLRISFNSDTTDYKIIHERLKTRKANDIIIXMKKLFIFDHQQLKKMKQIIEAQINKHKQDVIYEVNDXI