Scaffold Ga0272434_1001389

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1001389
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52878
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (20.31%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F025887	Metagenome	199	Y
F039410	Metagenome	163	Y
F044227	Metagenome	154	Y
F055318	Metagenome	138	Y
F057011	Metagenome	136	Y
F070712	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100138915	F025887	N/A	MSDDSFDFKSFTVDIILNSLEKIFKFLALINIEVIDMTFIDESLMSKLCERFDIQSISLSKSKLIQLYDKISDXKSITHALYILIMI
Ga0272434_10013893	F002432	N/A	MSFDSDMTDYKTTHERLEARKADDIVIXMKKLLSFDRQQLKKTKLIIKVQINKYKXNVIYEVDDXVXLSFRNVKTTRLCKDLKDKQLNFYQITVKVSIFYHLHLSVSMKHLHSMFSSKLLXLYSKDSLSKQHSESLRSVTIKDDEHXKINDILNFRCYRDQIQYKVKXKDLDRNNEXYYVNKEKFNDSEKVLNEFHKLYSSKPR
Ga0272434_100138947	F057011	N/A	LCSQIKVLLKENYFKKSFLINASFISQSNSFSLRFLIDSDFIIYMLIHDKLVNKVCQKLEIQSISLAKEKLIRDYNEKLARNTITHKILLKLTIKSHKKLTMSMLIADIEHHEAILSKSXMNKNEILLNMRHDTIIFSDQLNISILIFSILSNTKHSSXSRSTLISSAAHSKIFKMLKHSVSFFQKKSFLIQNIDVTSFQALVKRKKKN
Ga0272434_100138948	F070712	GAG	MNDIKEKKFLMKVRKQVIFAKKRDSLNLYRKIEVTTLINYSKSCNVILTSVKDIDLQAEICFICHKSNHTSRKCSDXSRVNALENDEFNQFTLNFEFNSDSKN
Ga0272434_100138952	F044227	AGG	MQLRMKSLDDEAYTHALLELIASAIKNVTRCXLLELLNNRRHHEESQSSSEDDDENEALEAI
Ga0272434_100138954	F055318	N/A	MLRDDEALCVDRVQSFRDYADFDNLNAHATKSNLHADEKVK
Ga0272434_100138958	F039410	N/A	MNKANTLVXFFFKRFNSVLNEATFMLXIENDSFXIVVETDRLSILEIFDXEVEVNEVDRDQLECFELEEIEKIEIEVSNXFGKTMTLICIFSNIFFLFIHDFSNMTSXXLMSAINIETVNFLXLSMMRFDRILXVIVFLNIFSSYSFINFSFVSDID
Ga0272434_10013897	F025887	N/A	MTESDILIFCFINMFDDSFNFKSFTVDIILNSLKKIFRSFALIDIEVIDIIFIDESLMSELCECFDI