Scaffold Ga0272434_1001323

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1001323
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54452
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (26.42%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F008115	Metagenome	338	Y
F008735	Metagenome	328	Y
F009580	Metagenome	315	Y
F036994	Metagenome	168	Y
F037509	Metagenome	167	Y
F061401	Metagenome	131	Y
F069514	Metagenome	123	Y
F081945	Metagenome	113	Y
F096307	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100132318	F069514	N/A	MQNDXAKLLLMTEFIDNNALFLVIFSISFFLNKDFHSHMSFELNVIEYESFCKRLQTTKVENISEHMNKTLKFAHESLVKT
Ga0272434_100132321	F096307	AGAAG	MLYIIVIQIDASLKENMLKHKKDVDLKDVYDTKKCVCHRNLLIIHNTKKYVCLKDNKSXLENARKEKRCXIIFESNLSQI
Ga0272434_100132322	F037509	N/A	MILISLFIQVHSTDNKMNIKKFVYLMINDIERQNNIKKSIKSMKMYNHMIAREFIAQSVTSVQIN
Ga0272434_100132327	F081945	N/A	MFSCLFTEEHFKEFQNRFFQISDVNSLKSSSAASFIHEDDESFAEMIILFMFYEIXKT
Ga0272434_100132328	F008735	N/A	MKEIMIIVYVHALYQTLLSCIQSIFVSFILRYVEKLLEFKSDDDSNRVCKEMNDERRLIVQDLCDDLSYHCKKLRIQLYINXRTENDEQEQDDNIMLSNLILKLLHYAKDLDXIFNHTLSELFNNTLIVDQEIVRQLHLSERITRXDFNVXKCCRKCRSFIMSKTRLN
Ga0272434_100132330	F009580	AGCAG	MIEVRVRRLRLVDKMICIQISEHDLAQKLDFFRRQRDFFIYTDDITVVNVHDMQSEELFIXAFFSNFARMLQLAVVTQLSLVADFLDLRNDQSLILNDDNDET
Ga0272434_100132333	F036994	AGCAG	MXDRMIIEADSLVDLLIEEINYRLVIEADSLVAREREVDXFTDR
Ga0272434_100132337	F008115	N/A	MNFITELFLSEDYNIICTIICHFIKECHYVFCHXEDDDISVEEIIXIMLXNVYQLHDLLSSIVSNRDFQFISTMXKSLCKQLRITVSLFTVYYSKINDQMKXVNQDVERELRIYCNYMQNDXVKXISMMKFSNNFNIFLIISMISFYFNKDFHLRMSFNSDTTDYEITRERLKARKANDIVIXMKKLLSFDHQQLKKTKLIIKAQINKHKRDVIYEINDXVXLFFRHVKITRSCKDLKNKQLKLYQITVKVKVFYYLHLLISMKHLHLMFSSKLLQLYSEDSLSEQHAESLKFIIIDDDDDEH
Ga0272434_100132343	F061401	N/A	LNNDQQVIQEIKNKIKCVNDFSKTIFHKATVVTQSVDHLKFNQLKLHEAILTSVKKVNVLVEICFICHKSDHSSKECLNQPTRINAVNDEYDHFDFNLNFDSKN
Ga0272434_100132347	F002432	N/A	MKFSDNFNIFSITSMTFFYFNKEFHLXMSFNLDTTDYKTTCEQLKARKANDIVIQMKELLNLSHQQLKKMKLIIEVQINKHRRNVIYEVNNXVXLFFRNVKIMRSCKDLKDKQLELYQIIIKAKVFYHLHLSVSMKHLHSMFSSKLLQLYSEDSLSEQHAEFFKLIIINDDNDEHXEINDILNFRCYQDXIC