Scaffold Ga0272434_1001296

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1001296
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55196
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (28.07%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F004755	Metagenome	424	Y
F028367	Metagenome	191	Y
F036994	Metagenome	168	Y
F083460	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100129633	F002432	N/A	MQNDXVKXIFMMKFSDNFNIFLITSMTFFYFNKEFYSXMSFDSDMTDYKTTCERLEAKKADNIIIXMKELLSFDRQQLKKTKLIIEVQINKHKRNIIYEVDDXVXLSFRNVKTTRLCKDLKDKQLNFYQIIAKVSIFYYLRLSVSMKHLHSMFSSKLLQSYSENFLSEQHSESLRSIIIKDDEHXKINNILNFRCYQDXIQYKVKXTNLDRNNKXYYVDKEKFNDSEKVLNEFHKLYSNKSR
Ga0272434_100129637	F028367	GAG	MISLCKLDEILLKENYFEKLFLIDAHLIFQNXSFSLRSLIDSDSIIYMIIHSNLVDKVCEKLKIQSISLTKEKLIRDYDEKIFKKIITHKILLNLIIKSHKKLTVSMLIADINHHEVILSKLXMNKNEILLNMQNDVIVFSNQLITSISIFPISLNSKHSSXSRSTSSSSII
Ga0272434_10012964	F036994	AGCAG	MXDRMIIEADSLVDLLIEEINYRLVIEAGSLVACEREVDRFTDR
Ga0272434_100129642	F083460	GAG	MRLRMKSSDSQAYSDALLELNASSIEYAARRRLHELSSHHLNHEKSQSNSENDDENKAAEAV
Ga0272434_100129649	F004755	N/A	LKELAELFNDSDKKVNFCRKYYNFIQESKKFSEFYTQFQQLSFYLKYHEKQLIIDLKDKINSRLRFIXIDQLVQPDFLKEIRFYLIHLNNNQRVIREIKNKVNLIKCVDDLSKIIFHKAVVTQSVDHSKPDHLKSCDAILTNIKEADVLVEICFICHKSDHSFKECSDRPIRINAVNNKYNYFEFDFDLNFDSKN