Scaffold Ga0272434_1001015

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1001015
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64746
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (24.14%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004755	Metagenome	424	Y
F008115	Metagenome	338	Y
F008169	Metagenome	337	Y
F011463	Metagenome	290	Y
F036504	Metagenome	169	Y
F039410	Metagenome	163	Y
F048017	Metagenome	148	Y
F057011	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100101510	F011463	GAG	VHEIETCMSSSILLLNFDHQQLKKTKLIIKAQINKHKRNVIYKIDDQIXLSFRNIKIMRSCKNLKDKQLDLYSIIVKVETFYHLHLSTSMKHIHLMFSSKILRSYSNDSLSDQHIKSFRSITIEDEEHXKINDILNFRRYXDRMQYKVKXKDLNKDDDXYYVNKEEFNDFKKVLNEFHMLHSNKPR
Ga0272434_10010153	F048017	N/A	MFINHQTLKIFMKNKQLSQXQVNYLNILSKFNFQIIFRSDKMNTKINALIRMLLANVSESAQRLEDRFQTILIFDRVNVLSVESKANLYHXVCMINXTDEFCSEYRQAMNENKLKFNITKLKDCEIIDDVLFRKDLLXVSENMHTKLLQEVHDQSSTSHLDNKRIINLVQHFYY
Ga0272434_100101538	F036504	N/A	VIFRLEDDVDQQIYAKHHVDAFSFYQSLSELLKHLKEIYKDQNLIXKYHHEYIALKQLNKLFSSFYSEFIRIFSFLNYNDVTLMNNIQNKINNHLQNALSVCLIKFSSLDKLKIFLQDVNNKQQVNYQLRDKQXTVKLIAASKKRFVSSLTSASVLITSYVQLATFFTLESEXSRMSIICFNCKVLNHLSKNYSQLKTSTLTSRAFISRLNEIIMSKEEKKLFTEKLKNETKN
Ga0272434_100101547	F057011	N/A	LNLENQCFRRXXVXSIYIELXVRFXFKKLAISFRVIKKIEIISLCSQIKVLLKENYFKKSFLINASFISQSNSFSLRSLIDSDFIVYMLIHDKLVNKIYQKLEIQSISLAKEKLIXDYDEKLAKKTITHKILLNLMIESHKKLTMSMLIADIEHYEAILSKF
Ga0272434_10010155	F008169	GAG	LKFSSAKSFINKDNESFTETVIFSVSIKNXKTRCMILDRETDQLNELSNQRDVEIKELKTRLQIKEITSSDFIYFKRSRSQKISDSFXFTDEKNFTXKNXYNKIQNKLEINVDLFSNEXIKLSYVHFRLFNDAADVTQSKRERNCVNFYKIIDDLLKELAELFNDSDKKVNFHKEYYNLIQELKKFSEFYTQFQRLSFYLKYHEKQLIIDLKDKINSRLRFIXINQLVQSDSLKEIRFYLIHLNNDQXVIXKIKNKVNLIKCINDLSKIIFHRVVVTQSVDHSKSDHLKSCNAILTSVKKADVLVEICFICHKSDHSSRECLDQSTRINEVNDEYDXFDFDSNFDSKN
Ga0272434_100101551	F004755	GAG	LSYIHSRLFDDVAEITQTRCKHDCVNLYRIIDDLLKELVQLFNDLNKKVNFCRKYYNLIQEFKKFSEFYTQFQRLSFYLNYHEKQLIADVKDKIHSRLRFIXVDQLVQSDSLKEIHFYLICLNNDQRVIQEIKNKIKCINDFSKTIFHKATVVTQSVDHLKSDQLKSRDAILTSVKEVNILIRSCFIYHKLNHSFKECLDRFTKINAVNNEYDCFDFNSNFDSKN
Ga0272434_100101552	F039410	N/A	LHXVLYAIFLLMFIMNRAKTSILSLFEQFNSVLNEAAFMLXIENSNSFXTSYLSIIKILVXMIEENKDDRDQLECFELRRIEKIKIEVFNXFEKTMMLFCIFSNISFLFIQSLLNMTSXXSISAINIDTVNFLXLSMMRLNRILXVMIFLDIFSS
Ga0272434_100101555	F008115	N/A	LISLKRXKDIAINFITELSLSEDYNVICTIICHLIKEHHYVFCHXEDDDISVEKTIXIMLXNVYQLHNLLSSIVSNRDSQFISTMXKSFCKRLRITASLFTVYHLKINNQTKRVNQDVERELRIYCNYMQNDXVKXISMMKFSDNFNIFSIISMISFYFNKEFHSRMSFNSDTTDYKTTRERFKARKADDIIIXMKELLSFDRQQLKKTKLIIEVQINKHRRNIIYEVDDXVXLSFRNVKTTRLCKDLKDKQLESYQITVKAKIFYHLHLSVSMKHLHSMFSLKLLQSYLEDLLSEQHAESLRLIIIDDDDDEHXKIDDILNFRRYRGXIQYKVKXKDLDRDNEXYYVNKDEFNDFEKVLNEFHALYSRKSR