Scaffold Ga0272434_1000894

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1000894
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 70484
• Total Scaffold Genes: 83
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (22.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F070710	Metagenome	122	Y
F087978	Metagenome	109	Y
F087979	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100089445	F087978	N/A	MFNSKLLQSYSEDFLSEQHAESLRFIIINKDDDEHXKINDILNFRRYXGXIQYKIKXKDLDRDDEXYYVDKDEFNDFEKVLNEFYVLYSRKSR
Ga0272434_100089450	F070710	N/A	MIKQSFLQILQYNIRKSLKIQKLFLINREVHDFDIIIIQKQSCNINDMQSFNSAYNFFYLVKNTSSQSRTCIYVNKYLRLDQXVIETAESNICLIRILTRNTDDETQTLQLINIYNLYSLFFTFTKRSLIISRLSKLLKNDCK
Ga0272434_100089463	F001951	N/A	MKLKFINSSRNKKERDEDTVETTVTKMMIFELKELLVNAKIFLILMNKMMIKTKXDXXCLSR
Ga0272434_100089467	F087979	N/A	MKEKNESSTFIYMNQAESRLDSSFIDLRLQKFMHIIEIIKTKLLKLN