Scaffold Ga0272434_1000673

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1000673
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 84005
• Total Scaffold Genes: 97
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (56.70%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006206	Metagenome	378	Y
F008668	Metagenome	329	Y
F044226	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100067388	F044226	GAG	MIEFSENFNIFSIISMTSFYFNKSFHSRMSFDSDTTDYETTRERLEARKANNIII
Ga0272434_100067392	F006206	GAG	LCKLDEILSEENYFEKSFLIDVFLNSQNRSFSLRSLIDSDSVAHTLIHANLVNRVCEKLEIQSISLTKEKLIRDYDEKISKKIITHKILFNLIIESHKKLTVSMLIADIDHHEVILSKL
Ga0272434_100067397	F008668	GAG	MMKFSDNFNIFSIISMTSFYFNKEFYPRMSFDSDTTDYETTRERLEARKADDIVIRMKELLSFDRQQLKKTKLIIEVQINKHRRNVIYEVDD