Scaffold Ga0272434_1000665

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1000665
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 84290
• Total Scaffold Genes: 95
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (52.63%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006206	Metagenome	378	Y
F008668	Metagenome	329	Y
F069514	Metagenome	123	Y
F094626	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100066584	F094626	N/A	MMKQVNKHRKEVDYEIESKMFLNERNIVTARFFKKLNDKMLDSFTNLDFVDSSYKLKLSEFMHVYDVFYPDLLRPAVDDLLPGQKNELSGSIVINDEDE
Ga0272434_100066585	F069514	GAG	MIEFVDNNALFSVIFSISFFLNKDFHSCMSFEFNVIEYESFRERLQTTKVENISEHMNKTLKFARESLVKT
Ga0272434_100066587	F008668	N/A	MISFYFNKEFHPRMSFDSDTTDYETTHERLEARKADDIIIQMKELLSFDHQQLKKMKLIIEVQINKHRRNVIYEVDD
Ga0272434_100066592	F006206	GAG	LCKLDEILSEENYFEKSFLIDIFLNSQNRSFSLYSLIDSDSVTHTLIHVNLVNRICKKLEIQFISLTKKKLIRDYDEKISKKIIIHKILLNLIIESHKKLTVSMLIADINHHEVILSKF