Scaffold Ga0272434_1000657

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1000657
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 84736
• Total Scaffold Genes: 106
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (20.75%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008169	Metagenome	337	Y
F008668	Metagenome	329	Y
F008735	Metagenome	328	Y
F020121	Metagenome	225	Y
F021026	Metagenome	220	Y
F023763	Metagenome	208	Y
F048017	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100065727	F021026	N/A	MIVFCILYQAQSKVSALALIDSDISAYVFMNKSFTQQHRLFLHLLIHSCRLQEFDDQVTLINDITHVIEFTIILDEHVEKLFFYVIELNQYFIIMSFSXLYHHFVYINFEHNTLILFSLFCLSHCCQFFVKIYDFNRSEENVLLEAKEVASTQFARKKQFSLQFAFKE
Ga0272434_100065731	F023763	GAG	MSFQNCLMLILMLRIKCIFLLRKIFXTTCQSIQFIIDLVEIICDAIVEFKQKLASTSLMTTQLLNXHEILKIFVIYDHLDRTDKVFKLXALFFECANNDYEFFIVDLIVTLDXIMLLEKVSDXMKNFILIILKENVFKHIVQSIDFYHNLVIXIVVM
Ga0272434_100065736	F020121	N/A	MKKLTEHLHDEMLITQIIYKFNVNLFRCSYFKYFVEDEVXLNACNLNIVHLAIKLNDHNVDLFKIKHVFKNNSLIIELNLSAFMKIHSIFYVILLNHIASDLFSSQCQKSQELVIIKNDERFXYVNSILNFKHDKCYNLSLLKYYIDXKDHFFTXKFFHLLNNCE
Ga0272434_100065748	F008735	N/A	MREIAIIVYIHALYQTLLSDIQLIFVLLILKYVEKLFEFNESRDSNRICKEMNDERKLIVQDLCNNLRYYHKRLRIQLYINXRTENDEQKXSDNIMLLNLILKLLHYAKDLNXIFNHTLSELFNSMLIINQEIVKXLYLNERILKXDFNIXKCCRKCRSFIMSKTRLN
Ga0272434_100065767	F008668	N/A	MKFSDNFNIFLITSMILFYFNKEFHSRMSFDSDTTDYETTCERLKARKADDIVIXMKELLSFDHQQLKKTKLIIEVQINKHKXNVIYEVNDXV
Ga0272434_100065768	F048017	N/A	MFIDHQTLKIFMKNKQLSXXQVNYLNILSKFNFQIIFRSGKMNTKVNALIRMSLTNVSELAQRLKDYFQTILIFDKVDVLSVESKANLYQXVHMINQTDELCSEYKQVMNENKLKFHITKLKDCEIIDDVLFRKDLLXVLENMHTKLLQKIHDQLSIFHLNNR
Ga0272434_100065771	F008169	AGG	MILDRETDQLNKLSNQXDDEIKELKTRLQTKEITSSDFIYSERSRSQKIPDSFXFTDEKNFTXENXYDKIQNKLEINVNLFSNERVKLSYVHFRLFDDTADVAQSRCKRDYVNLYKIVDNLLKKLAELFNDSNKKVNFHKEYYNLIQESKKFNKFYTQFQXLSFYLKYYEKQLIIDLKDKINSHLXFIXINQLVQSDSLKEIHFYLIHLNNDQXVIXKIKNKVNLIKHIDDLLKIIFHKAVVTQSVDHSKSDHLKLCDAILTSIKEADVLVETCFICHKLDHSSRECSDXSTRINAVNNEYDCFKFNFDSNFDSKN