Scaffold Ga0272434_1000429

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1000429
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 107399
• Total Scaffold Genes: 131
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (25.19%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F009377	Metagenome	318	Y
F017767	Metagenome	238	Y
F061400	Metagenome	131	Y
F064252	Metagenome	128	Y
F066295	Metagenome	126	Y
F079402	Metagenome	115	Y
F081945	Metagenome	113	Y
F086377	Metagenome	110	Y
F087979	Metagenome	109	Y
F098340	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_1000429111	F002432	N/A	MKFSDNFNIFLITSMILFYFNKEFHSXMSFNSDTTDYKTTCERLKARKANNIVIQIKELLNFNHQQLKKMKLIIEIQINKHRXNVIYEVNDXIXLSFRNVKTTRLCKDLKDKQLDFYQITVKVSIFYHLCLSVSMKHLHLMFSSKLLQSYSEDSLSEQHSESLRLITVKDDEHXEINDILNFRCYQGXIQYKVKXTNLDRNNKXYYVNKEKFNDLKKVLNEFHKLYSNKSR
Ga0272434_1000429115	F066295	AGAAG	LKTRLQAKENTSSDFIYSERSRSQKIPDSLLFTDEKNSTXKNXYGKIQNKLEINVNLFSNERVKLSYIHSRLFDDAAEITQTRRERDCVNLYRIVDDLLKELAQLFNDSNKKVNLHRKYYNLIQRFKKFNEFYTQFQRLSFYLNYHEK
Ga0272434_1000429116	F081945	N/A	MFSHSFTEERFEEFRNHFSQIFDADSLKSRMKSSSAASFIHEDDESFTETMIFSVFYEI
Ga0272434_1000429119	F098340	N/A	MIEFAAYQTLIKKKNVKIFTLIISKINKMLSLIKDSAKLNEMIFVMSLKKLKKKLSIIYHDFLNVFDREKITQLFLHQSYDHKIELKDEN
Ga0272434_1000429121	F087979	N/A	MKEKNESSTFIYMNXAKLRLDSSFIDLRLQKFMHMIKMIKTKLLKLD
Ga0272434_100042920	F064252	N/A	VNQSXSRQSTKSQASIKNCTXRESFTLFNNDHHKFFKFLNSFIFTDEDESTXDSXRIKINDKFQTNVDHFDNENICIVYVISRLEDDVAEHIFAQHXHDALHSYILIYELFEHLKEIYDKLNKNRKCCHEYNILRQADKSFNIFYFNFMKLFSYLEYNDCTLMNDLQNKINNRLQNALSVCSKNFTSLTHLRIFLQDVNSKQRVNYQLRSERCTVIIKVTVVPDKCATSLSVTTLIIDYVKLTIFSISESVRSSIICYICKILNHLFKNCFQLNKIDTSTSHAFTSCLHEIIISKNKENEKMSCENSEAKN
Ga0272434_100042921	F017767	N/A	MKDVLISSTISMSDDSFDSESLTTECVLSSNEISYALKLLIDIKAADYSFIDEVIT
Ga0272434_100042947	F086377	N/A	MIQRFXNQRQRISIFNDDNIQISIVHAEAKFFFEFLDEENKDDRLKMTDLNEFFAQILI
Ga0272434_100042955	F061400	N/A	MLLKYYNHIINLNSEKTIIEAXNIYRREEDEDNAIDESDDSFKTDLQNFLHFINV
Ga0272434_100042976	F009377	N/A	MTRSKESESVSIARYELQNARRESLLSHNXVASEEEDINAMSNIEEKNMNALFFDYEMIKISINEELNAXIIDKRTDNIIIFIKYMIHQHDIEIETHNDMIQMLKDVNKINIKLKTIQTTLNTIRTRLQKKMRNKNVIIHHLETASSQQSTLISKDXFSKSIKLSDSSLFEDSKQNMNNXLFQMRNKLKMNKNHFSIEELKIAYVKSXVNETMIKHIAFRMRNAIMNSFLEAEEMLLIINKMYDNFNQRHTTQRQFLKLYQNKIFFHDF
Ga0272434_100042999	F079402	N/A	MQNKLKMNKNHFSIKEMKIAYVKSXVSETMIKHIALKMRNMITNSFLEAEEILSIINKMYDDFN