Scaffold Ga0272434_1000405

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1000405
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 110262
• Total Scaffold Genes: 104
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (21.15%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F008115	Metagenome	338	Y
F008735	Metagenome	328	Y
F009580	Metagenome	315	Y
F033266	Metagenome	177	Y
F042102	Metagenome	158	Y
F057011	Metagenome	136	Y
F059496	Metagenome	133	Y
F061399	Metagenome	131	Y
F066295	Metagenome	126	Y
F068292	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_10004051	F008115	N/A	YRLHDLLSSIVSNRDSQFISTMXKSLCKRLRITASLFTVYHSKINDQTKXVNQDVERKLRIYCNYMQNDXVKXISMMKFSNHFNIFSIISMISFYFNKEFHSRMSFDSDTTNYETTRERLEARKADDIVIXMKELLSFNRQQLKKTKLIIEVQINKHRRNVIYEVDDXVXLSFRNVKTTRLCKDLKDKQLESYQITVKAKIFYHLRLSVSMKHLHSMFSSKLLRSYSEDSLSEQHAESLRLIIIDNDDDEHXEIDDILNFRRYRGQIQYKIKXKDLDRDDEXYYVDKDEFDDFEKVLNEFHMLYSRKPR
Ga0272434_100040538	F068292	GAG	LIKLSNSFIFIETDDSIXKTXNIKIADKLDVNVNHYSTEKICIVYMIFRLEDDADQQIYAKHCVDALSFYQSLSELLKHLKKICEDQNLIXKCRCKYVALKQLNKLFSFFYSEFTRIFNFLNYNNVTLMNDIQNKINNHLQNALSVCLIKFSSLDKLKIFLQDVNNKQQVNYQLRDEQRTVKSIAASKKHFVSSLTSASASTTSYVQLTTFSILESE
Ga0272434_100040544	F057011	N/A	MLXSNFKNQCIRRXRVXSIYIKLXVRFXFKKLVISFKVIKEIKIIFLCSQIKVLLKENYFEKSFLINASLISQSNSFSLRSLIDSDFVIYTLIHDKLVNKICQKLEIQSISLAKEKLIRDYDEKLVRKTITHKILLNLMIESHKKLTMSMLITDIEHHKAILSKLXMNKNEFLLNMKHDTIVFSD
Ga0272434_10004055	F059496	N/A	LIFKDSYNXILRIQKKIDTKASIYVMFKDCARLERNVFVTXEEYDVDEQDVVEKKECXERKRS
Ga0272434_100040554	F033266	N/A	MLSHSLTEERFEEFRNCFSQISDADLLKSRTKLSSAASFIHEDDESFTETIIFFMFYEIXKAXSLVLNEETDXLYKLNKQQEDEIKELKTKL
Ga0272434_100040557	F002432	GAG	LKRANQDVEHKLRIYCNYMQNNXAKXLSMIEFSENFNIFSIISMTSFYFNKNFHSRMSFNSDTTDYKTTCERVEARKADDIIIQMKELLSFNHQQLKKTKQIIKAQINKHKQNVIYEVNDXVXLFSRNIKTTKSCKNLKDKQLKLYQITVKVEIFYHLRLSISMKQLHSMFSSKLLHSYLDDFLSEQHSESSRFLIIKNDEHXKIDDILNSRRYXDXIQYKIKXTKLDXNNEXYYVDKEEFKNLKEVLVEFHKLYSDKSH
Ga0272434_100040565	F042102	N/A	MTKSSESASIARYELQNVRRKSLLLHNXTASEEEYMNMLLNTEEENMNALLFDHEMIKISISTELNAXVSTHEADDIVVFIKYICQQHDIEIKIHNDMIQMLEDVNEINITLKIIQTHLQKENRNKNMIIHHLKAASSXQSTLTSEDXFSKLIKLLNSSLFEDLLQNVNNXLFXMQNKLKINKNHFSIEELKIAYIASXVNEVAIKNIASXMKNMSLNLFLEVEEVLLIINKMYDDFNHHYMTQRQYLKLYQNKIFFHEFXMKFQRFSAELEYNNKTLLNNLQYKISSDLQQAMLNEQITNLNEFVNICMQVDVKLTELNTRSVIKALAIQAAHSVSSTSIAQLTSLVSLXKKFRRSNLDSIQKELFKKELCFKCKKSEHKAYDYLEIT
Ga0272434_100040586	F066295	N/A	LKTKLQTKEITSSDFIYSEHSRFQKISDSLXFTDEKNSTXENXYNKIQNKLEINIDLFSNERVKLSYVHFRLFNDAADVTQSRCKRYYVNFYKIIDDLLKELAELFNDLDKKVNFRKEYYNLIQELKKFSEFYTQFQQLFFYLKYHEKQLIIDLKDKINSRLQFI
Ga0272434_100040588	F008735	N/A	VNLLIYDELXLDINDLSSMREVIIIIHVHALYQTLLSDIQMIFVLLIFRYVEKLFKFNEDQNNDRICRDLNVEERLIAQSLCNNLSYHCKRLRIQFLINXRTKSDEXEXDDNIMLSNLILKLAHCAKDFNXVFDHTLSKLFNSTLIINXEAIRLLYLSKKITRRDFNIXKRCKKCRSFVMLKTRLD
Ga0272434_100040590	F009580	N/A	MICIQISEHNLAQKLNFFHRQRDFFIYTDDVTVVNVHDMQSEKLLNXAFFSNFAXMLQLAVVAQLSLVADFLDLRNDQSLILNDDNVEA
Ga0272434_100040595	F061399	N/A	LCSLSILKRRXRNVFMNYVNSLSLSIFMSITYRYVLVFVDYLIKMKHLVLITSMKVEEIINCFYAHVXKHHDLLEFFISDRDTQFIFNVXKHMCKMLKINVKLSMMYHFEINDQIKRFNTVMKHYLQVFVNYMQNDXVKXLSEVEFTVNNASSSIILASLFLINLSQNLHLNFESSESLLENFMFQARNKLINVKKFIKKMKKLTEHLHDEMLIAQIIYEFNVNLSRCSYSKYFVEDEVXLNACNLSIAHLTVKLNNHNIDFFKIKHVFKNNSLIIKLNLSAFMKIHSIFHVILLNHITSDFLLSQHQKF
Ga0272434_100040598	F008115	N/A	MNFITELSLSEDYNIICTIICCFIKECHYVFYHXKDDDISVEETVXIMLXNVYQLHNLFSSIVLNRNFQFILTMXKNLCKXLRITASLFTVYYLKIDDQTKXVNQDVEHELRIYCNYMQNNXVKXISIMKFSDNFNIFSIISMISFYFNKDFHPXMSFNSDTTDYEITHERLKAKKADDIIIXMKELLSFDHQQLKKMKLFIEAQINKHKRDIIYKVEDXIXLFFRNIKIMRLCKDLKDKQLELYQITVKARIFYHLRLSISMKHLHSMFNLKLLQLYSENLLSKQHAKFFRFIIIDEDDDEHXKINDILNFRCYXNXIQYKIK