Scaffold Ga0272434_1000400

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1000400
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 110635
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (33.85%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007459	Metagenome	350	Y
F015552	Metagenome	253	Y
F020636	Metagenome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100040012	F020636	N/A	MFRRNLKNNLKNEIIRDKKRINDMFDFIKVAINFDDKLYKKAMKKKYD
Ga0272434_100040014	F007459	N/A	MYFSCFAMNFSLHAIIYKYLISLLIITSIELYLSLVARFVDFDNLIIKFIVTSFHSDLSN
Ga0272434_100040059	F015552	N/A	MTQLTLNAKISNIIKITLFFVNYNKKLNLFREERTHLSTQLVIERVATLKKIYDNILKM
Ga0272434_10004009	F020636	N/A	MFRRDFKNNLKNEIMRDKKTLNDMFNFIEIVIDFDDKLYKRAMKKRYN