NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1000218

Scaffold Ga0272434_1000218


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1000218 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)143792
Total Scaffold Genes140 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (22.86%)
Novel Protein Genes17 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (23.53%)
Associated Families14

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F002432Metagenome559Y
F004755Metagenome424Y
F020121Metagenome225Y
F023763Metagenome208Y
F028978Metagenome189Y
F033266Metagenome177Y
F038484Metagenome165Y
F039410Metagenome163Y
F044227Metagenome154Y
F048017Metagenome148Y
F055318Metagenome138Y
F070710Metagenome122Y
F083460Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_10002181F004755N/ALYKIVDDLLKELAELFNDSDKKVNFRRKYYNLIQESKKFSEFYTQFQRLSFYLKYHEKQLIVDLKDKINSCLRFVXIDQLVQSNSLKKIHFYLIHLNNNQRVIQEIKNKVNLIKCIDDLSKIIFHKAVVTQSVNHSKSDHLKSRYAILTSVKKADVLVEICFICHKSDHSSRECLDXPTRINAVNDEYDXFNFNSNFDSKN
Ga0272434_100021810F028978N/AMKIADLKKKENDESIYXLILEVNRINENCVLLREVVSKDEAQYKDTKLRDCRVQNEILYRDDLL
Ga0272434_1000218102F083460GAGMQLRIKSSDSQAYSDALFELNASSIKYATRRXLHELSNHCLNHEEFQDNSENDDENEVAEVV
Ga0272434_1000218121F070710GAGMTNQKTRQILNDXEYSKSFLFAESTTVTNNIMIKQSFLXILQYNIRKSLKIQKSFLINREVRDFDIIVIQKQSCNINDIQSFNSVHNFFYLVKNTSSQSRTCIYVNKHLRLNQXVIETAESNICLIRILTCNTDDKTQTLQLINVYNSCSLFSTSIKKSSIISRLSELLKDDCKQLIMKDFNLHHSHXEEXKCFT
Ga0272434_1000218136F044227N/AMQLQLKSSDDKTCIYTLLKLIAFVIKNAMRHXLLKLLNNHCYHEESQSSCKNDDENKTSEAI
Ga0272434_1000218139F002432N/AMKFSDNFNIFLIISMIFFYFNKDFHSXMSFDSDTTDYNITCERLKARKADDIIIQMKELLSFNHQQLKKIKLIIEAQINKHRRDVIYEVKNXVXLFFRSVKIIRSCKDLKDKQLELYQITVKARVFYHLHLSISMKHLHSMFNSKLLQSYSEDFLSEQHAESLRLIIIDENDDKYXEINDILNFRCYXDXIQYKIKXKDLDRNDEXYYVDKDEFNDFKKVLNEFHMLYSRKSR
Ga0272434_100021830F083460N/AMQLRIKSSDSQAYSDALLELNASLIKYAARRQLHKLSSHCLNHEKSQSNSKNDNENEAAKAV
Ga0272434_100021851F038484N/AMRSILMCIARVLSAFXRSLRIFIVLLLRCDLCAEIALMSATRSLYFSHRXFHXSLXYCVIAMLSLVEIVVKKRICRLRLDCIFAPSQMKTFRSTIFLMTSEREMTRLTLVKRTRISSHACLISCVRSLTXLCSVILFCSMFRXTCSELVYVSASRVSMFTLLNASATXRRVXFXSVSSLRSLLDSSSFLSRXCQTDASNAISDLTTAEYTCLAFVKVALYVKTSRXLSVSILVTXFVSICRRCASHRSFVFSCISRTRTSDFNLITELSIYMLALMSNLFDFLVKCVSSYFSGANVASXVQAHFAQTSCALLSVLQISSVNLS
Ga0272434_100021855F033266N/AMSSHSSTEECFKEFRNRFSQISDADLSKSRTKSSSAASFTHEDDELFVKMIILLVFYKIXKTQSLVLDEETDXLYELNKQ
Ga0272434_100021857F039410N/ALHXVLYVIFLLMFIMNRTKTLILFFFEQFNNILNKAAFMLQIKNDSSXMSYLSIIKILVXMIEKSEDDRDQLECFELRKIEKIKIEAFNXFEKTMTLFCIFSNISFLFIQSLLNMTSXXLISAINIDTVNFLXLSMMRLSRILXVMIFLNIFSS
Ga0272434_100021869F004755N/AMXLKYVLILLCIIMLKCISSHLAFQTSCSDNEFYTQFQRLSFYLDYHKKLLIADLKDKIHFHLXFVXVNQLVQSDSLKEIHFYLIHLNNDQQVIXKIKNKIKCINNLSKTIFHKATIITQSVDHLKSVHLKSHDAILTNVKEADILVESCFVCHKSDHSSKKCLNQLTKINTVNNEYDCFNFNSNFDLKN
Ga0272434_100021872F048017N/AMFIDHQTLRIFMKNKQLSRXQVNYLNILLKFNFQIIFRSGKMNIKINALIRMLLANVSESTQHLEDHFQTILTLDRVNVLSVELKANFYHXVHMINQTDKLCSEYRQAMNENKLKFHITELKDCKIINDVLFRKDLLXISENMHTKLLQEVHDQSSISHFDNKQIIDLVQRFYY
Ga0272434_100021873F002432N/AMKFSNNFNIFSIILIIFFYFNKDYHSRMSFNSNTTNYKIIRERLKARKANNIVIXMKELLSFDHQQLKKTKLIIEAQINKHRXDVIYEINDXVXLFFKNVKITRSCKDLKDKQLELYQITVKARVFYHLHLLVSMKHLHLMFSLKLLQSYSEDFLSEQHAESLRLIIIDDDNDKYXKINDILNFRRYQGRIQYKIKXKDLNRDNEXYYVNKDEFNDFKKVLNEFHMLYSEKSR
Ga0272434_100021885F000597N/AMSMSNDSFASESLTIEYVLSNNEISYSLKSLINIEAADYSFIDEVITQIVFDQLQIKSLTLIKAKSIREFDDHYAKKFITHVIYLNLTV
Ga0272434_100021886F023763GAGMSFQNCLMLILMLRIKCIFFLRKIFXVMCQSIQLIIDLVEMISDVIVKSKQKFTSTSLMITQLLIXHEILKIFVIRDHLDRIDKVFELXSSFLKSMNNDHKFFIIDFVVTFNXVMLLXKVSDXMKNLILIVLKENVFEHIVXSIDFYHNLVIXIIVMKNNLESEDFLKSVECNLTFLKSDKEYIFSDETSERDNYSTIVINKSFIEFREI
Ga0272434_100021889F020121GAGMKKLTEHLRDEMLIAQIIYEFNVNLSRCSCFKYFVEDKVXLNVCNLSITHFIVKLDDHNVDLFKIKRVFKNNSLIIMLNLSTFMKIHSIFHITFLNHIASDFLSSQRQKSXELIVIKNDERFXYVNSILNFKRDKHYNSSLLKYYVDXKNHFFTXKSFHLLNNYKQALNKYYLVNSVIKELHILSYVMF
Ga0272434_100021894F055318N/AMLHDDEALCIDRVQSFRDRANFDNLNAHAISNLHADEKIK
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