Scaffold Ga0272434_1000146

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1000146
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 171509
• Total Scaffold Genes: 227
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 65 (28.63%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F002432	Metagenome	559	Y
F004755	Metagenome	424	Y
F009377	Metagenome	318	Y
F033266	Metagenome	177	Y
F055319	Metagenome	138	Y
F065269	Metagenome	127	Y
F086377	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_1000146116	F009377	AGAAG	MNVSLNTEEKNMNVLLFNHEMIKISISTELNAXISTHEADDIIVFIKYICQQHNIEIEIHNDMIQMLEDVNEINIMLKITQTRLQKENRNKNVIIHHLEVASSXQSTLTSEDXFLKLIKLLNSSLFEDSLQNVNNXLFXIXNKLKTNKNHFSIEELKIAYIESXVSEAAIKHIAL
Ga0272434_1000146170	F086377	N/A	MIQRFXDQRQRILILDCDSVQISIVHAEAKFFFKFLDEKNRDDHLKVTDLNEIFAQILIQIMMKF
Ga0272434_1000146174	F055319	AGCAG	MIEVRMRRLRLVDKMICIQISERNLAQKLDFFRRQXDFFIYTNDITVINIHDMQSEELFI
Ga0272434_1000146175	F001951	N/A	MIKLRFIDSSRNEKERNKDTVKTTVTEMIIFELKELLINAKMLLILMNEMMMKMK
Ga0272434_1000146188	F004755	GAG	LFNDSNKEVNFYKEYYNLIQEFKKFNEFYTQFQRLSFYLNYYEKQLIVDLKDKIYSRLXFIXINQLVQSDFLKEIRFYLIHLNNDQRVIQKIKNKIKHVDDLSKTIFHKVIIVTQSVDHSKSDQLKSRDAVLTNVKEANILVESCFIYHKSDHSFK
Ga0272434_1000146189	F033266	N/A	MSSHSFTEEHFKEFRNRFSQISDADSLKSRTKSSSAASFIHEDDASFIEMMILFVFYEIXKTQSLVLNEETNQLYKLNKQQEDEIKELKTKL
Ga0272434_1000146203	F065269	N/A	MTRSSKSASIAYYELQNVRRKSLLSQNQTASEEEDTNALLNIEEKNMNVLLFDHEMIKISISTKLNA
Ga0272434_1000146227	F002432	N/A	SKIDNQTKRVNQDVERELRIYCNYMQNDXVKXISMMKFSDNFNIFSVISMISFYFNKKFHPRMSFDSDTTDYETTCEXLEARKADNIIIXMKELLSFNHQQLKKTKLIIEVQINKHRRNIIYEVDDXVXLSFKNVKTMRLCKDLKDKQLELYQITVKARVFYHLHLSVSMKHLHLMFSSKLLRLYSEDSLSEQHAESLRLIIINDDNDEHXKIDDILNFRRYRDRIQYKIKXKDLDRDNEXYYVDKDEFNDFEKVLNEFHVLYSRKLR